1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCTCGTGACTCTAGCTTACTCTTTCACCCGACTGGACGAGGATCCTGATGTCAAGGTTATAATTCTTACAGGAGCTGGGAGAGCTTTCTCCGCTGGAGTGgtaaccttcttgactcactcattgaggagagaaaaagatctattcctctgggttaccttcaaatatggcatgcctttggatgctagaaatgaataattgtcctatagaaacctcgccaatcataaatgttctcttgcag
species | Physcomitrella patens |
transcript | PP1S62_178V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCAAGGTTATAGTTCTTACAGGAGCTGGGAGAGCTTTCTCCGCTGGAGTG GATTTAACAGCAGCTTCAGATGTGTTCAAGGGTGATGTCAAGACTGAAGCGEST: gi|162267394|gb|FC443937.1|FC443937
genomic: TCAAGGTTATAATTCTTACAGGAGCTGGGAGAGCTTTCTCCGCTGGAGTGgtaaccttct ... tctcttgcagGATTTAACAGCAGCTTCAGATGTGTTCAAGGGTGATGTCAAGACTGAAGCG
EST: TCAAGGTTATAATTCTTACAGGAGCTGGGAGAGCTTTCTCCGCTGGAGTG GATTTAACAGCAGCTTCAGATGTGTTCAAGGGTGATGTCAAGACTGAAGCGEST: gi|162257574|gb|FC433708.1|FC433708
genomic: TCAAGGTTATAATTCTTACAGGAGCTGGGAGAGCTTTCTCCGCTGGAGTGgtaaccttct ... tctcttgcagGATTTAACAGCAGCTTCAGATGTGTTCAAGGGTGATGTCAAGACTGAAGCG
EST: TCAAGGTTATAATTCTTACAGGAGCTGGGAGAGCTTTCTCCGCTGGAGTG GATTTAACAGCAGCTTCAGATGTGTTCAAGGGTGATGTCAAGACTGAAGCGEST: gi|18354969|gb|BJ187028.1|BJ187028
genomic: TCAAGGTTATAATTCTTACAGGAGCTGGGAGAGCTTTCTCCGCTGGAGTGgtaaccttct ... tctcttgcagGATTTAACAGCAGCTTCAGATGTGTTCAAGGGTGATGTCAAGACTGAAGCG
EST: TCAAGGTTATAATTCTTACAGGAGCTGGGAGAGCTTTCTCCGCTGGAGTG GATTTAACAGCAGCTTCAGATGTGTTCAAGGGTGATGTCAAGACTGAAGCGEST: gi|18368075|gb|BJ200160.1|BJ200160
genomic: TCAAGGTTATAATTCTTACAGGAGCTGGGAGAGCTTTCTCCGCTGGAGTGgtaaccttct ... tctcttgcagGATTTAACAGCAGCTTCAGATGTGTTCAAGGGTGATGTCAAGACTGAAGCG
EST: TCAAGGTTATAATTCTTACAGGAGCTGGGAGAGCTTTCTCCGCTGGAGTG GATTTAACAGCAGCTTCAGATGTGTTCAAGGGTGATGTCAAGACTGAAGCGEST: gi|162262356|gb|FC437683.1|FC437683
genomic: TCAAGGTTATAATTCTTACAGGAGCTGGGAGAGCTTTCTCCGCTGGAGTGgtaaccttct ... tctcttgcagGATTTAACAGCAGCTTCAGATGTGTTCAAGGGTGATGTCAAGACTGAAGCG
EST: TCAAGGTTATAATTCTTACAGGAGCTGGGAGAGCTTTCTCCGCTGGAGTG GATTTAACAGCAGCTTCAGATGTGTTCAAGGGTGATGTCAAGACTGAAGCGEST: gi|18368248|gb|BJ200333.1|BJ200333
genomic: TCAAGGTTATAATTCTTACAGGAGCTGGGAGAGCTTTCTCCGCTGGAGTGgtaaccttct ... tctcttgcagGATTTAACAGCAGCTTCAGATGTGTTCAAGGGTGATGTCAAGACTGAAGCG
EST: TCAAGGTTATAATTCTTACAGGAGCTGGGAGAGCTTTCTCCGCTGGAGTG GATTTAACAGCAGCTTCAGATGTGTTCAAGGGTGATGTCAAGACTGAAGCG
genomic: TCAAGGTTATAATTCTTACAGGAGCTGGGAGAGCTTTCTCCGCTGGAGTGgtaaccttct ... tctcttgcagGATTTAACAGCAGCTTCAGATGTGTTCAAGGGTGATGTCAAGACTGAAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCGTGACTCTAGCTTACTCTTTCACCCGACTGGACGAGGATCCTGATGTCAAGGTTATAATTCTTACAGGAGCTGGGAGAGCTTTCTCCGCTGGAGTGgtaaccttcttgactcactcattgaggagagaaaaagatctattcctctgggttaccttcaaatatggcatgcctttggatgctagaaatgaataattgtcctatagaaacctcgccaatcataaatgttctcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA