1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TGGACACCGCATAGGCACAGCCGAGGTTGAATCTGCGCTAGTATCGCATCCTCAGTGCGCTGAAGCTGCAGTCGTCGGGTTCGATCACGAGgtatgaaaccatttacactgcttcgtctttgtgtgtttgaaatcactgtaccggacaaggttgacctacttttttcttttctttacttagtatttgttaacttgtgaatagggactgtgtctcgtaagcttacgtttggtaaatttatatttgacttttgtgcag
species | Physcomitrella patens |
transcript | PP1S61_296V6.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TATCGCATCCTCAGTGCGCTGAAGCTGCAGTCGTCGGGTTCGATCACGAG GTGAAAGGCCAAGGTATCTTTGCTTTCGTTACCCTTCTAGAATTCGTCGAGEST: gi|37851473|gb|BJ609481.1|BJ609481
genomic: TATCGCATCCTCAGTGCGCTGAAGCTGCAGTCGTCGGGTTCGATCACGAGgtatgaaacc ... ttttgtgcagGTGAAAGGCCAAGGTATCTTTGCTTTCGTTACCCTTCTAGAATTCGTCGAG
EST: TATCGCATCCTCAGTGCGCTGAAGCTGCAGTCGTCGGGTTCGATCACGAG GTGAAAGGCCAAGGTATCTTTGCTTTCGTTACCCTTCTAGAATTCGTNGAGEST: gi|37836534|gb|BJ594542.1|BJ594542
genomic: TATCGCATCCTCAGTGCGCTGAAGCTGCAGTCGTCGGGTTCGATCACGAGgtatgaaacc ... ttttgtgcagGTGAAAGGCCAAGGTATCTTTGCTTTCGTTACCCTTCTAGAATTCGTCGAG
EST: TATCGCATCCTCAGTGCGCTGAAGCTGCAGTCGTCGGGTTCGATCACGAG GTGAAAGGCCAAGGTATCTTTGCTTTCGTTACCCTTCTAGAATTCGTCGAGEST: gi|37825079|gb|BJ583145.1|BJ583145
genomic: TATCGCATCCTCAGTGCGCTGAAGCTGCAGTCGTCGGGTTCGATCACGAGgtatgaaacc ... ttttgtgcagGTGAAAGGCCAAGGTATCTTTGCTTTCGTTACCCTTCTAGAATTCGTCGAG
EST: TATCGCATCCTCAGTGCGCTGAAGCTGCAGTCGTCGGGTTCGATCACGAG GTGAAAGGCCAAGGTATCTTTGCTTTCGTTACCCTTCTAGAATTCGTCGAGEST: gi|67724644|gb|BJ974903.1|BJ974903
genomic: TATCGCATCCTCAGTGCGCTGAAGCTGCAGTCGTCGGGTTCGATCACGAGgtatgaaacc ... ttttgtgcagGTGAAAGGCCAAGGTATCTTTGCTTTCGTTACCCTTCTAGAATTCGTCGAG
EST: TATCGCATCCTCAGTGCGCTGAAGCTGCAGTCGTCGGGTTCGATCACGAG GTGAAAGGCCAAGGTATCTTTGCTTTCGTTACCCTTCTAGAATTCGTCGAGEST: gi|37834316|gb|BJ592328.1|BJ592328
genomic: TATCGCATCCTCAGTGCGCTGAAGCTGCAGTCGTCGGGTTCGATCACGAGgtatgaaacc ... ttttgtgcagGTGAAAGGCCAAGGTATCTTTGCTTTCGTTACCCTTCTAGAATTCGTCGAG
EST: TATCGCATCCTCAGTGCGCTGAAGCTGCAGTCGTCGGGTTCGATCACGAG GTGAAAGGCCAAGGTATCTTTGCTTTCGTTACCCTTCTAGAATTCGTCGAGEST: gi|67725835|gb|BJ976094.1|BJ976094
genomic: TATCGCATCCTCAGTGCGCTGAAGCTGCAGTCGTCGGGTTCGATCACGAGgtatgaaacc ... ttttgtgcagGTGAAAGGCCAAGGTATCTTTGCTTTCGTTACCCTTCTAGAATTCGTCGAG
EST: TATCGCATCCTCAGTGCGCTGAAGCTGCAGTCGTCGGGTTCGATCACGAG GTGAAAGGCCAAGGTATCTTTGCTTTCGTTACCCTTCTAGAATTCGTCGAG
genomic: TATCGCATCCTCAGTGCGCTGAAGCTGCAGTCGTCGGGTTCGATCACGAGgtatgaaacc ... ttttgtgcagGTGAAAGGCCAAGGTATCTTTGCTTTCGTTACCCTTCTAGAATTCGTCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGACACCGCATAGGCACAGCCGAGGTTGAATCTGCGCTAGTATCGCATCCTCAGTGCGCTGAAGCTGCAGTCGTCGGGTTCGATCACGAGgtatgaaaccatttacactgcttcgtctttgtgtgtttgaaatcactgtaccggacaaggttgacctacttttttcttttctttacttagtatttgttaacttgtgaatagggactgtgtctcgtaagcttacgtttggtaaatttatatttgacttttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG