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CGGGAATGATGAGAACTCTGCAGGGAGACCACGATCGATACGAAACTACGTATTTTGCTCCTTTCAAGGGATACTACTTCAGTGGAGATGGATGCCGCAGgtctactttcatactgatttgggaggccttttgatgattgtatactagaaagcagctgcggtgttcagtgagtacaaccaaaaagaaaaggatatgttcttttgcgattggaaagtcgcacataattatcttgcaatagttagcattacgtaaccgctatgtgcag
species | Physcomitrella patens |
transcript | PP1S61_296V6.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TATTTTGCTCCTTTCAAGGGATACTACTTCAGTGGAGATGGATGCCGCAG GGATAAAGACGGATTCTACTGGTTGACAGGACGAGTTGATGATGTGATCAAEST: gi|37836534|gb|BJ594542.1|BJ594542
genomic: TATTTTGCTCCTTTCAAGGGATACTACTTCAGTGGAGATGGATGCCGCAGgtctactttc ... ctatgtgcagGGATAAAGACGGATTCTACTGGTTGACAGGACGAGTTGATGATGTGATCAA
EST: TATTTTGCTCCTTTCAAGGGATACTACTTCAGTGGAGATGGATGCCGCAG GGATAAAGACGGATTCTACTGGTTGACAGGACGAGTTGATGATGTGATCAAEST: gi|37825079|gb|BJ583145.1|BJ583145
genomic: TATTTTGCTCCTTTCAAGGGATACTACTTCAGTGGAGATGGATGCCGCAGgtctactttc ... ctatgtgcagGGATAAAGACGGATTCTACTGGTTGACAGGACGAGTTGATGATGTGATCAA
EST: TATTTTGCTCCTTTCAAGGGATACTACTTCAGTGGAGATGGATGCCGCAG GGATAAAGACGGATTCTACTGGTTGACAGGACGAGTTGATGATGTGATCAAEST: gi|67724644|gb|BJ974903.1|BJ974903
genomic: TATTTTGCTCCTTTCAAGGGATACTACTTCAGTGGAGATGGATGCCGCAGgtctactttc ... ctatgtgcagGGATAAAGACGGATTCTACTGGTTGACAGGACGAGTTGATGATGTGATCAA
EST: TATTTTGCTCCTTTCAAGGGATACTACTTCAGTGGAGATGGATGCCGCAG GGATAAAGACGGATTCTACTGGTTGACAGGACGAGTTGATGATGTGATCAAEST: gi|37834316|gb|BJ592328.1|BJ592328
genomic: TATTTTGCTCCTTTCAAGGGATACTACTTCAGTGGAGATGGATGCCGCAGgtctactttc ... ctatgtgcagGGATAAAGACGGATTCTACTGGTTGACAGGACGAGTTGATGATGTGATCAA
EST: TATTTTGCTCCTTTCAAGGGATACTACTTCAGTGGAGATGGATGCCGCAG GGATAAAGACGGATTCTACTGGTTGACAGGACGAGTTGATGATGTGATCAAEST: gi|67725835|gb|BJ976094.1|BJ976094
genomic: TATTTTGCTCCTTTCAAGGGATACTACTTCAGTGGAGATGGATGCCGCAGgtctactttc ... ctatgtgcagGGATAAAGACGGATTCTACTGGTTGACAGGACGAGTTGATGATGTGATCAA
EST: TATTTTGCTCCTTTCAAGGGATACTACTTCAGTGGAGATGGATGCCGCAG GGATAAAGACGGATTCTACTGGTTGACAGGACGAGTTGATGATGTGATCAA
genomic: TATTTTGCTCCTTTCAAGGGATACTACTTCAGTGGAGATGGATGCCGCAGgtctactttc ... ctatgtgcagGGATAAAGACGGATTCTACTGGTTGACAGGACGAGTTGATGATGTGATCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGGAATGATGAGAACTCTGCAGGGAGACCACGATCGATACGAAACTACGTATTTTGCTCCTTTCAAGGGATACTACTTCAGTGGAGATGGATGCCGCAGgtctactttcatactgatttgggaggccttttgatgattgtatactagaaagcagctgcggtgttcagtgagtacaaccaaaaagaaaaggatatgttcttttgcgattggaaagtcgcacataattatcttgcaatagttagcattacgtaaccgctatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA