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...gaaagtcctcttcgaccctggatcccatcggtggttttgaaagtcctcttcgaccctggatcccatcggaatactgataggctgttgatgagatgtgcagTATGACGAGATGTACAAGCGATCCGTGGAGGATCCCGACGGGTTCTGGGGCGACATCGCATCCACATTCTTTTGGAAGAAAAAATGGCCGACAACAGAAG
species | Physcomitrella patens |
transcript | PP1S61_296V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACCGAGCGAGGCGTTTCGGCAGCGCGCGTTAGTGGCGTCCCGGGCGCAA TATGACGAGATGTACAAGCGATCCGTGGAGGATCCCGACGGGTTCTGGGGCEST: gi|67717318|gb|BJ967577.1|BJ967577
genomic: CACCGAGCGAGGCGTTTCGGCAGCGCGCGTTAGTGGCGTCCCGGGCGCAAgtaaggcttc ... agatgtgcagTATGACGAGATGTACAAGCGATCCGTGGAGGATCCCGACGGGTTCTGGGGC
EST: CACCGAGCGAGGCGTTTCGGCAGCGCGCGTTAGTGGCGTCCCGGGCGCAA TATGACGAGATGTACAAGCGATCCGTGGAGGATCCCGACGGNTTCTGGGGCEST: gi|18342506|gb|BJ174541.1|BJ174541
genomic: CACCGAGCGAGGCGTTTCGGCAGCGCGCGTTAGTGGCGTCCCGGGCGCAAgtaaggcttc ... agatgtgcagTATGACGAGATGTACAAGCGATCCGTGGAGGATCCCGACGGGTTCTGGGGC
EST: CACCGAGCGAGGCGTTTCGGCAGCGCGCGTTAGTGGCGTCCCGGGCGCAA TATGACGAGATGTACAAGCGATCCGTGGAGGATCCCGACGGGTTCTGGGGCEST: gi|67712937|gb|BJ966386.1|BJ966386
genomic: CACCGAGCGAGGCGTTTCGGCAGCGCGCGTTAGTGGCGTCCCGGGCGCAAgtaaggcttc ... agatgtgcagTATGACGAGATGTACAAGCGATCCGTGGAGGATCCCGACGGGTTCTGGGGC
EST: CACCGAGCGAGGCGTTTCGGCAGCGCGCGTTAGTGGCGTCCCGGGCGCAA TATGACGAGATGTACAAGCGATCCGTGGAGGATCCCGACGGGTTCTGGGGCEST: gi|18347544|gb|BJ179591.1|BJ179591
genomic: CACCGAGCGAGGCGTTTCGGCAGCGCGCGTTAGTGGCGTCCCGGGCGCAAgtaaggcttc ... agatgtgcagTATGACGAGATGTACAAGCGATCCGTGGAGGATCCCGACGGGTTCTGGGGC
EST: CACCGAGCGAGGCGTTTCGGCAGCGCGCGTTAGTGGCGTCCCGGGCGCAA TATGACGAGATGTACAAGCGATCCGTGGAGGATCCCGACGGGTTCTGGGGCEST: gi|18357166|gb|BJ189225.1|BJ189225
genomic: CACCGAGCGAGGCGTTTCGGCAGCGCGCGTTAGTGGCGTCCCGGGCGCAAgtaaggcttc ... agatgtgcagTATGACGAGATGTACAAGCGATCCGTGGAGGATCCCGACGGGTTCTGGGGC
EST: CACCGAGCGAGGCGTTTCGGCAGCGCGCGTTAGTGGCGTCCCGGGCGCAA TATGACGAGATGTACAAGCGATCCGTGGAGGATCCCGACGGGTTCTGGGGCEST: gi|18345966|gb|BJ178009.1|BJ178009
genomic: CACCGAGCGAGGCGTTTCGGCAGCGCGCGTTAGTGGCGTCCCGGGCGCAAgtaaggcttc ... agatgtgcagTATGACGAGATGTACAAGCGATCCGTGGAGGATCCCGACGGGTTCTGGGGC
EST: CACCGAGCGAGGCGTTTCGGCAGCGCGCGTTAGTGGCGTCCCGGGCGCAA TATGACGAGATGTACAAGCGATCCGTGGAGGATCCCGACGGGTTCTGGGGCEST: gi|18352756|gb|BJ184811.1|BJ184811
genomic: CACCGAGCGAGGCGTTTCGGCAGCGCGCGTTAGTGGCGTCCCGGGCGCAAgtaaggcttc ... agatgtgcagTATGACGAGATGTACAAGCGATCCGTGGAGGATCCCGACGGGTTCTGGGGC
EST: CACCGAGCGAGGCGTTTCGGCAGCGCGCGTTAGTGGCGTCCCGGGCGCAA TATGACGAGATGTACAAGCGATCCGTGGAGGATCCCGACGGGTTCTGGGGC
genomic: CACCGAGCGAGGCGTTTCGGCAGCGCGCGTTAGTGGCGTCCCGGGCGCAAgtaaggcttc ... agatgtgcagTATGACGAGATGTACAAGCGATCCGTGGAGGATCCCGACGGGTTCTGGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaagtcctcttcgaccctggatcccatcggtggttttgaaagtcctcttcgaccctggatcccatcggaatactgataggctgttgatgagatgtgcagTATGACGAGATGTACAAGCGATCCGTGGAGGATCCCGACGGGTTCTGGGGCGACATCGCATCCACATTCTTTTGGAAGAAAAAATGGCCGACAACAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA