1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtcagtcttggtgttatcagtgaccatcgcgtttgtgaagggagtggaatgtggagacgcaatggaactcgctgagtggaggagtggtctgactgagtgtgatgtttggcatgtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCCGGATGCGAGTGTTAAGAGTAGCGGAGTTGCTGCGATGGGAAATGCCAG
species | Physcomitrella patens |
transcript | PP1S61_279V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAAT TTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|208389135|gb|DC945711.1|DC945711
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAAT TTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|100411870|gb|BY992381.1|BY992381
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAAT TTACCTGCCTGATACGATCGACGTGAACGCCAGCEST: gi|208378881|gb|DC927583.1|DC927583
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGC
EST: TTCCAGTGTATNGCCAAGANCGCATTGAAGANCGAGACGGAGGAGGAAAT TTACNTGCNTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|100392311|gb|BY953300.1|BY953300
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAAT TTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|162262618|gb|FC438439.1|FC438439
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAAT TTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|37829857|gb|BJ587869.1|BJ587869
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAAT TTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|162262619|gb|FC438440.1|FC438440
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAAT TTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|162263651|gb|FC438887.1|FC438887
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAAT TTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|208360449|gb|DC950048.1|DC950048
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: AGAACGAGACGGAGGAGGAAAT TTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|208362152|gb|DC954319.1|DC954319
genomic: AGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAAT TTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|208387145|gb|DC941317.1|DC941317
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAAT TTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|208374370|gb|DC948402.1|DC948402
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACGCA-TGAAGAACGAGACGGAGGAGGAAAT TTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|100403295|gb|BY991132.1|BY991132
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAAGAAAT TTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|208372735|gb|DC952622.1|DC952622
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAAT TTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|162262701|gb|FC438483.1|FC438483
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAAT TTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|162231219|gb|FC407006.1|FC407006
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAAT TTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|162231220|gb|FC407007.1|FC407007
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAAT TTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCEST: gi|67695653|gb|BJ955886.1|BJ955886
genomic: TTCCAGTGTATTGCCAAGAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
EST: TCCAGTGTATTGCCAAGGAACGCATTGAAGAACGAGACGGAGGAGGAAAT TTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
genomic: TCCAGTGTATTGCCAA-GAACGCATTGAAGAACGAGACGGAGGAGGAAATgtgagtcagt ... gtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTC
ctcgctgagtggaggagtggtctgactgagtgtgatgtttggcatgtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCCGGATGCGAGTGTTAAGAGTAGCGGAGTTGCTGCGATGGGAAATGCCAG
gtctgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcagtcttggtgttatcagtgaccatcgcgtttgtgaagggagtggaatgtggagacgcaatggaactcgctgagtggaggagtggtctgactgagtgtgatgtttggcatgtggttgcagTTACCTGCCTGATACGATCGACGTGAACGCCAGCAGGCCACAGAAAACTTCCGGATGCGAGTGTTAAGAGTAGCGGAGTTGCTGCGATGGGAAATGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC