Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agatattcgtctctagaagaaaaattcgtttcttcaactctcttgtcctaatgccctaatgcgccaacaattccaagctattttatttttttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGA

Basic information

species Physcomitrella patens
transcript PP1S61_279V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S61_279V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os01g12730.2 (Oryza sativa), 3'ss of exon 2
agatattcg--tctctagaagaaaaattcgtttcttcaactctcttgtcctaatgccctaatg-cgccaacaattccaagctattttatttttttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGA
| ||| | |  | | | | |   ||| |  |  |||    ||  |||||  |  |   |  || |  ||   |  | ||    | |  ||   | ||    |||||||||| ||||| || || ||||| |||||||||||||| || || ||||| || || || || || ||||||||||| || ||||| |||||||  |
aaatactagaatgtatggcaatcaaagtaataccttg---tcatttgtcaaacagtaattctgtctacatttacgctaatacttgtgtttacctggaacttagATTTGGGACACAGCGGGACAGGAGCGATTTCAGAGTCTTGGTGTGGCATTTTACCGGGGAGCTGACTGCTGTGTTCTTGTATATGATGTCAATGTTACCA

upper sequence: PP1S61_279V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os05g44050.1 (Oryza sativa), 3'ss of exon 3
agatat-tcgtctctagaagaaaaattcgtttcttcaactctcttgtcctaatg-ccctaatgcgccaacaattccaagctattttatttttttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGA
 ||| | |    | ||        || | |      || |     |    |    | || ||  ||       |    |||      | | |||   ||||||| |||||||| ||||| || ||  |||||||||||||||| || || || || ||||| |||||||| |||||||| || || ||||| |||  |||||
-gatgtgttagatgtacggctgtcatgcatacaaataaattgggaggatcaccatctcttatttgctggtttatttt-gctgaaccgtgtattttgttgcagATATGGGATACTGCTGGCCAGGAAAGGTTTCAGAGTCTTGGTGTTGCATTCTACCGTGGAGCAGATTGCTGTGTTCTAGTTTATGATGTCAATTCTATGA

upper sequence: PP1S61_279V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA07G00660.1 (Glycine max), 3'ss of exon 3
agatattcgtctctagaagaaaaattcgt-ttcttcaactctcttgtc-ctaatgccctaatgcgccaacaattccaagct---attttatttttttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGA
      || | |  |  |   |  |  || ||||   |  |  |||    | |||    |  |    ||  |||  ||  |   || || |     |   |||||||||||||||| ||||| ||||||||||||||||||||||| || || || || |||||||||||||| ||||| ||||| || ||||| || || ||||
----tgtcatattgattaagcagttctgtattctgtgatccgtttgaagtttatggaagagag-attaatcatttaaaattgagatgttctcaccatacatgcagATTTGGGATACTGCTGGTCAAGAGCGGTTTCAGAGTCTTGGCGTGGCTTTCTACCGTGGTGCAGATTGCTGTGTCCTTGTTTATGATGTAAACGTCATGA

upper sequence: PP1S61_279V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA08G21940.1 (Glycine max), 3'ss of exon 3
agatattcgtctctagaagaaaaattcgt-ttcttcaactctcttgtc-ctaatgccctaatgcgccaacaattccaagct---attttatttttttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGA
      || | |  |  |   |  |  || |||||  |     ||| |  | |||    |  |    ||  ||   ||  |   || || ||    |   |||||||||||||||| ||||| ||||| |||||||| |||||||| || || || || |||||||||||||| ||||| ||||| || ||||| || || ||||
----tgtcatattcattaagcagttctgtattctttgatctgtttgacgtttatgaaagagag-attaattatctaaaattgagatgttcttaccatacatgcagATTTGGGATACTGCTGGTCAAGAACGGTTTCAAAGTCTTGGTGTGGCTTTCTACCGTGGTGCAGATTGCTGTGTCCTTGTTTATGATGTAAACGTCATGA

upper sequence: PP1S61_279V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA12G04830.1 (Glycine max), 3'ss of exon 3
agatattcgtctctagaagaaaaattcgtttcttcaactctcttgtcctaatgccctaatgcgccaacaattccaagctattttatttttttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGA
   |||||  |     |        |   || || || | |   ||   |||     ||           ||   |  | |  | || ||     | |||||||||||||||||||| |||||  | || || || |||||||| || || ||||||||||| ||||||||||||||||| || ||||| |||   ||||
gtctattctacatctcatatttctatgtctttttaaagttttaggttacaatagttcaaattttattttcttattaattttaatgttcttaactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTCTATCGTGGTGCTGATTGTTGTGTTCTTGTATATGATGTTAATTCAATGA

upper sequence: PP1S61_279V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA11G12630.3 (Glycine max), 3'ss of exon 3
agatattcgtc-tctagaagaaaaattcgtttcttcaactctctt-gtcctaatgccctaatgcgccaacaattccaagctattttatttttttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGA
   |||||  | |||   |     ||| || | || ||   | |  ||   |||   | ||           ||   |  |    | || ||     | |||||||||||||||||||| |||||  | || || || |||||||| || || ||||||||||| ||||||||||||||||| || ||||| |||   ||||
--ctattctacatctcatatttctatttgtctttttaaagttttaagttacaatagtcgaaattttattttgttattaatttccatgttcttaactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTCTATCGTGGTGCTGATTGTTGTGTTCTTGTATATGATGTTAATTCGATGA

upper sequence: PP1S61_279V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT1G49300.1 (Arabidopsis thaliana), 3'ss of exon 3
----agatattcgtctctagaagaaaaattcgtttcttcaactctcttgtcctaatgccctaatgcgccaacaattccaagctattttatttttttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGA
    | |     |||| ||||  || ||||  |  |    ||| | |          |  |  |   |||  |   | ||| | ||   |||||||   | ||||| ||||| |||||||| |||||  |||||||||||||||| || || |||||||||||||| ||||| ||||||||||| || ||||| ||       |
gaccataagagtgtct-tagattaagaattgatcccaagtactatatatattgctctctttgcttgaccataagagctaaggtcttgctttttttt---tacagATCTGGGACACAGCTGGTCAAGAAAGGTTTCAGAGTCTTGGTGTTGCGTTTTATCGTGGTGCTGATTGCTGTGTTCTTGTATATGATGTCAACTCCGCAA

upper sequence: PP1S61_279V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT3G18820.1 (Arabidopsis thaliana), 3'ss of exon 2
--------------------------------------------------agatattcgtctctagaagaaaaattcgtttct-------tcaactctcttgtcctaatgccctaatgcgccaacaattccaagctattttatttttttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGA
                                                  ||||  | ||    ||   ||   |||   | |       | | || |||||    |   | || |   |        |  |  || | | | | | || | | ||||| |||||||||||||| || ||  |||||||||| ||||| || |||||||| |||||||| ||||| ||||||||||| || ||||| |||   ||||
gttcctactagtgctttattagttagtcactcaatattttttttgaagtaagatgcttgtgctcagctcaacctttcacatttgtgtgaattacctttcttgcttgagctcactcacttgttcctgtcttta--ctttgtcaatgtgtttattacagATCTGGGATACAGCTGGACAGGAAAGGTTTCAGAGCCTTGGTGTAGCCTTTTACCGTGGTGCTGATTGCTGTGTTCTTGTATATGATGTCAATTCCATGA

upper sequence: PP1S61_279V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: Vv09s0002g04220.t01 (Vitis vinifera), 3'ss of exon 3
-agatattcgtctctagaagaaaaattcgtttcttcaactctcttgtcctaatgccctaatgcgccaacaattccaagc--tattttatttttttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGA
   |||   |  | | ||| |   | | |||| |     |  ||      ||||   |  |   | |  | ||     |   ||| | ||||| |   | ||||| ||||| |||||||| |||||  |||| || || ||||| || || ||||||||||||||||| || ||||||||||| || ||||||||||| ||||
ggcatagaagcttgttgaaaactgaatggtttttct--ttagctgacggaaatgatttgtt-tacaattatttaaggacaacattctgtttttatatattcagATATGGGACACAGCTGGACAAGAAAGGTTCCAAAGCCTTGGTGTGGCTTTTTATCGTGGTGCAGACTGCTGTGTTCTTGTGTATGATGTGAATGTGATGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100359334|gb|BY965696.1|BY965696
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|100404323|gb|BY973519.1|BY973519
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|100411870|gb|BY992381.1|BY992381
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|100355333|gb|BY945882.1|BY945882
EST:     ACTTTCTAACTAAGGAAGAGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|100442547|gb|BY963241.1|BY963241
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|100385743|gb|BY987808.1|BY987808
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|100392311|gb|BY953300.1|BY953300
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|100398316|gb|BY972543.1|BY972543
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|100444782|gb|BY982611.1|BY982611
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|162262619|gb|FC438440.1|FC438440
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|100443167|gb|BY981793.1|BY981793
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|100442275|gb|BY981299.1|BY981299
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|67572285|gb|BJ945109.1|BJ945109
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|208383813|gb|DC915152.1|DC915152
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|100383933|gb|BY987190.1|BY987190
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|100443114|gb|BY981740.1|BY981740
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|100374250|gb|BY985734.1|BY985734
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|100409462|gb|BY992023.1|BY992023
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|162162113|gb|FC338904.1|FC338904
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|208377828|gb|DC940940.1|DC940940
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|162263652|gb|FC438888.1|FC438888
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|100403295|gb|BY991132.1|BY991132
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|100371248|gb|BY986011.1|BY986011
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|100389472|gb|BY988950.1|BY988950
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
EST: gi|100424769|gb|BY976806.1|BY976806
EST:     ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAG                         ATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT
genomic: ACTTTCTAACTAAGGAAGTGCAGGTTGAAGACAGACTTGTTACGATGCAGgttagtctcc ... ttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctaatgccctaatgcgccaacaattccaagctattttatttttttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGA
                                ctattttattttttt  CT-rich tract
                             aagctattttattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agatattcgtctctagaagaaaaattcgtttcttcaactctcttgtcctaatgccctaatgcgccaacaattccaagctattttatttttttgagtgcagATTTGGGATACAGCTGGGCAAGAGCGGTTTCAGAGTCTTGGAGTCGCCTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT