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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtattattttatatcatatacaaagagctttgtgatgaatcaagctttttatggagtacgtctggctttcatgtattcctctttgaatatgttttc...

Basic information

species Physcomitrella patens
transcript PP1S61_279V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S61_279V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM5G811797_T01 (Zea mays), 5'ss of exon 4
CTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtattattttatatcatatacaaagagctttgtgatgaatcaagctttttatggagtacgtctggctttc-atgtattcctctttgaatatgttttc
 || || || || |||||||||||||| || ||||| ||||| |||  |||||| || |||||||| ||| |||||||| | || |||||||| |||||||  |  | ||||||  |   | ||  |      |  |   |  |||   ||  ||   |    || |      | |  |||   | ||| | | ||     
ATTCTACCGGGGAGCAGATTGTTGTGTCCTAGTCTATGATGTTAATTCTATGAAATCGTTTGATAATCTTCACAACTGGCGTGAAGAGTTTCTAATTCAGgtga--aatattttcaacggtttattagttcagtgattcagtctcacaattcataacaatcctgttttttcccctaactatggatgtttcactttgcag--

upper sequence: PP1S61_279V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA12G04830.1 (Glycine max), 5'ss of exon 4
CTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtattattttatatcatatacaaagagctttgtgatgaatcaagctttttatggagtacgtctggctttcatgtattcctctttgaatatgttttc
 || ||||||||||| ||||||||||||||||| || ||||| |||   ||||| || ||||| |||||| | ||||||||||| || ||||||||||| | | |  ||  ||  | || | || |||     |   | |   |   ||   || |  |  || | |    |   |||  ||   || | |         
TTTCTATCGTGGTGCTGATTGTTGTGTTCTTGTATATGATGTTAATTCAATGAAATCATTTGACAACCTTAATAACTGGAGGGAGGAATTTCTGATTCAAgtatgcttttattcctctctt-tataaattttctcaagctatgttgtgcagattttaca--acttttaagat--gtgtgatcactttggcag--------

upper sequence: PP1S61_279V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA11G12630.4 (Glycine max), 5'ss of exon 4
CTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtattattttatatcatatacaaagagctttgtgatgaatcaagctttttatggagtac-gtctggctttcatgtattcctctttgaatatgttttc----
 || ||||||||||| ||||||||||||||||| || ||||| |||   ||||| || ||||| |||||| | ||||||||||| || ||||||||||| | | |  ||  ||  | || | || ||     | |  | |  ||| |   | | | |   |   ||   | ||| |       || ||   || |||  ||    
TTTCTATCGTGGTGCTGATTGTTGTGTTCTTGTATATGATGTTAATTCGATGAAATCATTTGACAACCTTAATAACTGGAGGGAGGAATTTCTGATTCAAgtatgcttttattcctttc-tgtataattttttctcagttttatctattatctcaagctatgttgtacagattttacaa----cttttaagatttgtgatcactt

upper sequence: PP1S61_279V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA11G12630.1 (Glycine max), 5'ss of exon 4
CTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtattattttatatcatatacaaagagctttgtgatgaatcaagctttttatggagtac-gtctggctttcatgtattcc----tctttgaatatgttttc--
 || ||||||||||| ||||||||||||||||| || ||||| |||   ||||| || ||||| |||||| | ||||||||||| || ||||||||||| | | |  ||  ||  | || | || ||     | |  | |  ||| |   | | | |   |   ||   | ||| |    ||      | | |||  |  ||  |  
TTTCTATCGTGGTGCTGATTGTTGTGTTCTTGTATATGATGTTAATTCGATGAAATCATTTGACAACCTTAATAACTGGAGGGAGGAATTTCTGATTCAAgtatgcttttattcctttc-tgtataattttttctcagttttatctattatctcaagctatgttgtacagattttacaacttttaagatttgtgatcactttggcag

upper sequence: PP1S61_279V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA07G00660.1 (Glycine max), 5'ss of exon 4
CTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtattattttatatcatatacaaagagctttgtgatgaatcaagctttttatggagtacgtctggctttcatgtattcctctttgaatatgttttc
 || || |||||||||||||| ||||| ||||| || ||||| || || ||||| || ||||| |||||| || ||||| | || || ||||| ||||||| || |  |||  ||| ||  |||  |      |||      |   ||    | ||| |  |  | |   |||||                         
TTTCTACCGTGGTGCAGATTGCTGTGTCCTTGTTTATGATGTAAACGTCATGAAATCCTTTGACAACCTTAACCACTGGCGAGAAGAATTTCTTATTCAGgtaatt--tatggtatctc-catatcacctttattgaagatcagagagaaactcatgcaa-atattttattttcag------------------------

upper sequence: PP1S61_279V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA08G21940.1 (Glycine max), 5'ss of exon 4
CTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtattattttatatcatatacaaagagctttgtgatgaatcaagctt---tttatggagtac--gtctggctttcatgtattcctctttgaatatgttttc
 || || |||||||||||||| ||||| ||||| || ||||| || || ||||| || ||||| |||||| || ||||| | || || ||||| ||||||| || |  ||||||| | ||    |     | |||||| |   || |  ||   ||||| ||  |   ||  |    ||||| |    | ||    |  |     
TTTCTACCGTGGTGCAGATTGCTGTGTCCTTGTTTATGATGTAAACGTCATGAAATCCTTTGACAACCTTAACCACTGGCGAGAAGAATTTCTTATTCAGgtaatt--tatttta-accactctcct---gttttgtggtatctccatattacctttattgaagatcagtgagaaactcatgcaaatattttattttcag-----

upper sequence: PP1S61_279V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT3G18820.1 (Arabidopsis thaliana), 5'ss of exon 3
CTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtattattttatatcatatacaaagagctttgtgatgaatcaagctttttatggagtacgtctggctttcatgtattcctctttgaatatgttttc---
|||||| |||||||| ||||| ||||||||||| || ||||| |||   ||||| || ||||| || ||  ||||||||||||| || |||||||| |||| ||  ||   || ||  | | |   |    || |||    |   |||  ||  |       |  ||      |||  |  |    |  ||||| | ||    
CTTTTACCGTGGTGCTGATTGCTGTGTTCTTGTATATGATGTCAATTCCATGAAATCATTTGAAAATCTGAACAACTGGAGGGAAGAATTTCTGATCCAGgtaa-cata--ttcatgccttttctcac---ctctgtagacag--aagaattccacaataagcaacta-----cataaacactgagtgtaatatctcttgcag

upper sequence: PP1S61_279V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT1G49300.1 (Arabidopsis thaliana), 5'ss of exon 4
CTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtattattttatatcatatacaaagagctttgtgatgaatcaagctttttatggagtacgtctggctttcatgtattcctctttgaatatgttttc
 |||||||||||||| ||||| ||||||||||| || ||||| ||       || || || ||  | ||  ||||||||||||| ||||||||||| |||| |   ||   | || ||| ||  |      |||  |  |  || ||       |  ||       ||||||  |  |       ||   || ||     
GTTTTATCGTGGTGCTGATTGCTGTGTTCTTGTATATGATGTCAACTCCGCAAAATCATTCGAGGATCTCAACAACTGGAGGGAAGAGTTTCTGATCCAGgtataaatatatatagatcttactctct---cttcctagtagattaa-------agagaaagaacttggcttgaaattgcggtaattgtgatttgcag--

upper sequence: PP1S61_279V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv09s0002g04220.t01 (Vitis vinifera), 5'ss of exon 4
CTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtattattttatatcatatacaaagag--ctttgtgatgaatcaagctttttatggagtacgtctggctttcatgtattcctctttgaatatgttttc
 ||||||||||||||||| || ||||||||||| || ||||||||||| ||||| || |||||||| ||| |||||||| | || |||||||||||||||| || | || ||| |||   | | |  |||   ||      |  ||  | |   | |  ||       || ||||  ||  ||     || |          
TTTTTATCGTGGTGCAGACTGCTGTGTTCTTGTGTATGATGTGAATGTGATGAAATCATTTGATAATCTTAACAACTGGCGAGAAGAGTTTCTGATTCAGgtaatt-ttctttcatactctcttctgagaatcctccccattttatagaaccaatgactgaa---acttgtcttttgtggttttggtgttcag---------

upper sequence: PP1S61_279V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv03s0063g02420.t01 (Vitis vinifera), 5'ss of exon 5
CTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtattattttatatca-tatacaaagagctttgtgatgaatcaagctttttatggagtacgtctggctttcatgtattcctctttgaatatgttttc
 || || |||||||| ||||| ||||||||||| || ||||| ||||| |||||||| ||||| || ||  |||| |||||||| || ||||| ||||||| |  | |||| || | | | ||||        || |  |   |  | |  |  || |  | |   ||   |||     || | | |    ||  ||| | 
TTTCTACCGTGGTGCTGATTGCTGTGTTCTTGTATATGATGTTAATGTGATGAAGTCATTTGACAATCTAAACAATTGGAGGGAAGAATTTCTCATTCAGgtagttcttatgttcttttagtatattttacttttggccacagaagagggctactacgatgaa-acctctttttggaacatgcatgtcaccatgagttctt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100359334|gb|BY965696.1|BY965696
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|100404323|gb|BY973519.1|BY973519
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAGA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|100411870|gb|BY992381.1|BY992381
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|100355333|gb|BY945882.1|BY945882
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTTCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|100442547|gb|BY963241.1|BY963241
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|100385743|gb|BY987808.1|BY987808
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|100392311|gb|BY953300.1|BY953300
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|100398316|gb|BY972543.1|BY972543
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|100444782|gb|BY982611.1|BY982611
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|162262619|gb|FC438440.1|FC438440
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|100443167|gb|BY981793.1|BY981793
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|100442275|gb|BY981299.1|BY981299
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|67572285|gb|BJ945109.1|BJ945109
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|208383813|gb|DC915152.1|DC915152
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|100383933|gb|BY987190.1|BY987190
EST:     TGAAGGCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAAC
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAAC
EST: gi|100443114|gb|BY981740.1|BY981740
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|100374250|gb|BY985734.1|BY985734
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|100409462|gb|BY992023.1|BY992023
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|162162113|gb|FC338904.1|FC338904
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|208387145|gb|DC941317.1|DC941317
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCTG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAGATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|208377828|gb|DC940940.1|DC940940
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|162263652|gb|FC438888.1|FC438888
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|100403295|gb|BY991132.1|BY991132
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|208372735|gb|DC952622.1|DC952622
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|162262701|gb|FC438483.1|FC438483
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|100371248|gb|BY986011.1|BY986011
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: gi|100389472|gb|BY988950.1|BY988950
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGAT
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGAT
EST: gi|100424769|gb|BY976806.1|BY976806
EST:     TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG                         GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTTTATCGTGGTGCAGATTGTTGTGTTCTTGTCTACGATGTGAATGTTATGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtattattttatatcatatacaaagagctttgtgatgaatcaagctttttatggagtacgtctggctttcatgtattcctctttgaatatgttttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG