1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctggagagaagggcgttagtctcgaatgcgtgggcgtaagatcgtcttgtcacagagcaagttcaaggtcttgaatttgtgtatgacttgtggtcggcagATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTTAAGAAGAGGCTATCGTCGTTCCACGAACAGACCACACCC
species | Physcomitrella patens |
transcript | PP1S61_267V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATCTTATCACTCCAAGTTTGCACCCCCGAAGGTGCCTGGCCGTGATGAC ATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTTEST: gi|208373590|gb|DC952415.1|DC952415
genomic: GATCTTATCACTCCAAGTTTGCACCCCCGAAGGTGCCTGGCCGTGATGACgtaagtttta ... tggtcggcagATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTT
EST: GATCTTATCACTCCAAGTTTGCACCCCCGAAGGTGCCTGGCCGTGATGAC ATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTTEST: gi|7147997|gb|AW509919.1|AW509919
genomic: GATCTTATCACTCCAAGTTTGCACCCCCGAAGGTGCCTGGCCGTGATGACgtaagtttta ... tggtcggcagATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTT
EST: GATCTTATCACTCCAAGTTTGCACCCGCGAAGGTGCCTGGCCGTGATGAC ATTACTGGAGAGCCTTTGCTGCATCGCAAGGATGACACTGTGGAAGTGCTTEST: gi|37849264|gb|BJ607272.1|BJ607272
genomic: GATCTTATCACTCCAAGTTTGCACCCCCGAAGGTGCCTGGCCGTGATGACgtaagtttta ... tggtcggcagATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTT
EST: ACTCCAAGTTTGCACCCCCGAAGGTGCCTGGCCGTGATGAC ATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTTEST: gi|208363576|gb|DC939767.1|DC939767
genomic: ACTCCAAGTTTGCACCCCCGAAGGTGCCTGGCCGTGATGACgtaagtttta ... tggtcggcagATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTT
EST: GATCTTATCACTCCAAGTTTGCACCCCCGAAGGTGCCTGGCCGTGATGAC ATTACTGGAGAGCCTTTGTTGCAGCGCAAGAATGACACTGTGGAAGTGCTTEST: gi|208357429|gb|DC910742.1|DC910742
genomic: GATCTTATCACTCCAAGTTTGCACCCCCGAAGGTGCCTGGCCGTGATGACgtaagtttta ... tggtcggcagATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTT
EST: GATCTTATCACTCCAAGTTTGCACCCCCGAANGTGCCTGGCCGTGATGAC ATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAANTGCTTEST: gi|162152017|gb|FC328438.1|FC328438
genomic: GATCTTATCACTCCAAGTTTGCACCCCCGAAGGTGCCTGGCCGTGATGACgtaagtttta ... tggtcggcagATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTT
EST: GATCTTATCACTCCAAGTTTGCACCCCCGAAGGTGCCTGGCCGTGATGAC ATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTTEST: gi|162152018|gb|FC328439.1|FC328439
genomic: GATCTTATCACTCCAAGTTTGCACCCCCGAAGGTGCCTGGCCGTGATGACgtaagtttta ... tggtcggcagATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTT
EST: GATCTTATCACTCCAAGTTTGCACCCCCGAAGGTGCCTGGCCGTGATGAC ATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTTEST: gi|162258565|gb|FC434780.1|FC434780
genomic: GATCTTATCACTCCAAGTTTGCACCCCCGAAGGTGCCTGGCCGTGATGACgtaagtttta ... tggtcggcagATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTT
EST: GATCTTATCACTCCAAGTTTGCACCCCCGAAGGTGCCTGGCCGTGATGAC ATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTTEST: gi|162258566|gb|FC434781.1|FC434781
genomic: GATCTTATCACTCCAAGTTTGCACCCCCGAAGGTGCCTGGCCGTGATGACgtaagtttta ... tggtcggcagATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTT
EST: GATCTTATCACTCCAAGTTTGCACCCCCGAAGGTGCCTGGCCGTGATGAC ATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTTEST: gi|37849830|gb|BJ607838.1|BJ607838
genomic: GATCTTATCACTCCAAGTTTGCACCCCCGAAGGTGCCTGGCCGTGATGACgtaagtttta ... tggtcggcagATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTT
EST: CTTATCACTCCAAGTTTGCACCCCCGAAGGTGCCTGGCCGTGATGAC ATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTT
genomic: CTTATCACTCCAAGTTTGCACCCCCGAAGGTGCCTGGCCGTGATGACgtaagtttta ... tggtcggcagATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTT
cttgtcacagagcaagttcaaggtcttgaatttgtgtatgacttgtggtcggcagATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTTAAGAAGAGGCTATCGTCGTTCCACGAACAGACCACACCC
ttgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggagagaagggcgttagtctcgaatgcgtgggcgtaagatcgtcttgtcacagagcaagttcaaggtcttgaatttgtgtatgacttgtggtcggcagATTACTGGAGAGCCTTTGTTGCAGCGCAAGGATGACACTGTGGAAGTGCTTAAGAAGAGGCTATCGTCGTTCCACGAACAGACCACACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG