1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCTGCTAATCTGGAGGATGTGCCCAACGATGTGCTCTTCCATGAGCTTCTGCGCCGCATGAAGTGTGCCCCCAAACAGGAGAAGCGCCTCATCCTTGTTGgtatatgcacgcttttgggtttcaggtgttttgagatttctgggttgcaaaacgtagaatgcctagcgagcattttctaaccgtggttgttacatttgaatgctgatttggtttttcgtatttgtttagttttgtgtttgattgttattgttttgtattgtgtcatctag
species | Physcomitrella patens |
transcript | PP1S61_267V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGCCGCATGAAGTGTGCCCCCAAACAGGAGAAGCGCCTCATCCTTGTTG GGCCTCCGGGATGTGGGAAGGGAACCCAATCGCCCATTCTCAAGGAGGAGCEST: gi|18368471|gb|BJ200556.1|BJ200556
genomic: GCGCCGCATGAAGTGTGCCCCCAAACAGGAGAAGCGCCTCATCCTTGTTGgtatatgcac ... tgtcatctagGGCCTCCGGGATGTGGGAAGGGAACCCAATCGCCCATTCTCAAGGAGGAGC
EST: GCGCCGCATGAAGTGTGCCCCCAAACAGGAGAAGCGCCTCATCCTTGTTG GGCCTCCGGGATGTGGGAAGGGAACCCAATCGCCCATTCTCAAGGAGGAGCEST: gi|18369302|gb|BJ201388.1|BJ201388
genomic: GCGCCGCATGAAGTGTGCCCCCAAACAGGAGAAGCGCCTCATCCTTGTTGgtatatgcac ... tgtcatctagGGCCTCCGGGATGTGGGAAGGGAACCCAATCGCCCATTCTCAAGGAGGAGC
EST: GCGCCGCATGAAGTGTGCCCCCAAACAGGAGAAGCGCCTCATCCTTGTTG GGCCTCCGGGATGTGGGAAGGGAACCCAATCGCCCATTCTCAAGGAGGAGCEST: gi|208363576|gb|DC939767.1|DC939767
genomic: GCGCCGCATGAAGTGTGCCCCCAAACAGGAGAAGCGCCTCATCCTTGTTGgtatatgcac ... tgtcatctagGGCCTCCGGGATGTGGGAAGGGAACCCAATCGCCCATTCTCAAGGAGGAGC
EST: GCGCCGCATGAAGTGTGCCCCCAAACAGGAGAAGCGCCTCATCCTTGTTG GGCCTCCGGGATGTGGGAAGGGAACCCAATCGCCCATTCTCAAGGAGGAGCEST: gi|208357429|gb|DC910742.1|DC910742
genomic: GCGCCGCATGAAGTGTGCCCCCAAACAGGAGAAGCGCCTCATCCTTGTTGgtatatgcac ... tgtcatctagGGCCTCCGGGATGTGGGAAGGGAACCCAATCGCCCATTCTCAAGGAGGAGC
EST: GCGCCGCATGAAGTGTGCCCCCAAACAGGAGAAGCGTCTCATCCTTGTTG GGCCTCCGGGATGTGGGAAGGGAACCCAATCGCCCATTCTCAAGGAGGAGCEST: gi|162152018|gb|FC328439.1|FC328439
genomic: GCGCCGCATGAAGTGTGCCCCCAAACAGGAGAAGCGCCTCATCCTTGTTGgtatatgcac ... tgtcatctagGGCCTCCGGGATGTGGGAAGGGAACCCAATCGCCCATTCTCAAGGAGGAGC
EST: GCGCCGCATGAAGTGTGCCCCCAAACAGGAGAAGCGCCTCATCCTTGTTG GGCCTCCGGGATGTGGGAAGGGAACCCAATCGCCCATTCTCAAGGAGGAGCEST: gi|18375207|gb|BJ206785.1|BJ206785
genomic: GCGCCGCATGAAGTGTGCCCCCAAACAGGAGAAGCGCCTCATCCTTGTTGgtatatgcac ... tgtcatctagGGCCTCCGGGATGTGGGAAGGGAACCCAATCGCCCATTCTCAAGGAGGAGC
EST: GCGCCGCATGAAGTGTGCCCCCAAACAGGAGAAGCGCCTCATCCTTGTTG GGCCTCCGGGATGTGGGAAGGGAACCCAATCGCCCATTCTCAAGGAGGAGCEST: gi|162258566|gb|FC434781.1|FC434781
genomic: GCGCCGCATGAAGTGTGCCCCCAAACAGGAGAAGCGCCTCATCCTTGTTGgtatatgcac ... tgtcatctagGGCCTCCGGGATGTGGGAAGGGAACCCAATCGCCCATTCTCAAGGAGGAGC
EST: GCGCCGCATGAAGTGTGCCCCCAAACAGGAGAAGCGCCTCATCCTTGTTG GGCCTCCGGGATGTGGGAAGGGAACCCAATCGCCCATTCTCAAGGAGGAGCEST: gi|100431663|gb|BY960311.1|BY960311
genomic: GCGCCGCATGAAGTGTGCCCCCAAACAGGAGAAGCGCCTCATCCTTGTTGgtatatgcac ... tgtcatctagGGCCTCCGGGATGTGGGAAGGGAACCCAATCGCCCATTCTCAAGGAGGAGC
EST: GCGCCGCATGAAGTGTGCCCCCAAACAGGAGAAGCGCCTCATCCTTGTTG GGCCTCCGGGATGTGGGAAGGGAACCCAATCGCCCATTCTCAAGGAGGAGC
genomic: GCGCCGCATGAAGTGTGCCCCCAAACAGGAGAAGCGCCTCATCCTTGTTGgtatatgcac ... tgtcatctagGGCCTCCGGGATGTGGGAAGGGAACCCAATCGCCCATTCTCAAGGAGGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCTAATCTGGAGGATGTGCCCAACGATGTGCTCTTCCATGAGCTTCTGCGCCGCATGAAGTGTGCCCCCAAACAGGAGAAGCGCCTCATCCTTGTTGgtatatgcacgcttttgggtttcaggtgttttgagatttctgggttgcaaaacgtagaatgcctagcgagcattttctaaccgtggttgttacatttgaatgctgatttggtttttcgtatttgtttagttttgtgtttgattgttattgttttgtattgtgtcatctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC