1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gcatgaatgttctaacctttctcttgaaaattttctggtttttagagttttatgatcggagctattagaagctcaatggagttactagttttgtcaccgttagtgacatctaccgtgctcctttgcagTTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAACTTTGAGATTGAAGATTCTGTCCTTGAAGAGCGTATTACTGGGCGGTGGA
species | Physcomitrella patens |
transcript | PP1S61_267V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGGTTTTATTCTTGATGGCTTCCCCCGCACTGTTGTCCAAGCACAGAAG TTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAACEST: gi|37850614|gb|BJ608622.1|BJ608622
genomic: AGGGTTTTATTCTTGATGGCTTCCCCCGCACTGTTGTCCAAGCACAGAAGgcatgaatgt ... tcctttgcagTTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAAC
EST: GTCCAAGCACAGAAG TTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAACEST: gi|208373590|gb|DC952415.1|DC952415
genomic: GTCCAAGCACAGAAGgcatgaatgt ... tcctttgcagTTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAAC
EST: TCCCCCGCACTGTTGTCCAAGCACAGAAG TTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAACEST: gi|18369302|gb|BJ201388.1|BJ201388
genomic: TCCCCCGCACTGTTGTCCAAGCACAGAAGgcatgaatgt ... tcctttgcagTTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAAC
EST: AGGGTTTTATTCTTGATGGCTTCCCCCGCACTGTTGTCCAAGCACAGAAG TTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGEST: gi|7147997|gb|AW509919.1|AW509919
genomic: AGGGTTTTATTCTTGATGGCTTCCCCCGCACTGTTGTCCAAGCACAGAAGgcatgaatgt ... tcctttgcagTTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAG
EST: AGGGTTTTATTCTTGATGGCTTCCCCCGCACTGTTGTCCAAGCACAGAAG TTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAACEST: gi|208363576|gb|DC939767.1|DC939767
genomic: AGGGTTTTATTCTTGATGGCTTCCCCCGCACTGTTGTCCAAGCACAGAAGgcatgaatgt ... tcctttgcagTTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAAC
EST: AGGGTTTTATTCTTGATGGCTTCCCCCGCACTGTTGTCCAAGCACAGAAG TTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAACEST: gi|208357429|gb|DC910742.1|DC910742
genomic: AGGGTTTTATTCTTGATGGCTTCCCCCGCACTGTTGTCCAAGCACAGAAGgcatgaatgt ... tcctttgcagTTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAAC
EST: AGGGTTTTATTCTTGATGGCTTCCCCCGCACTGTTGTCCAAGCACAGAAG TTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAACEST: gi|162152017|gb|FC328438.1|FC328438
genomic: AGGGTTTTATTCTTGATGGCTTCCCCCGCACTGTTGTCCAAGCACAGAAGgcatgaatgt ... tcctttgcagTTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAAC
EST: TTCTTGATGGCTTCCCCCGCACTGTTGTCCAAGCACAGAAG TTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAACEST: gi|162152018|gb|FC328439.1|FC328439
genomic: TTCTTGATGGCTTCCCCCGCACTGTTGTCCAAGCACAGAAGgcatgaatgt ... tcctttgcagTTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAAC
EST: AGGGTTTTATTCTTGATGGCTTCCCCCGCACTGTTGTCCAAGCACAGAAG TTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAACEST: gi|162258565|gb|FC434780.1|FC434780
genomic: AGGGTTTTATTCTTGATGGCTTCCCCCGCACTGTTGTCCAAGCACAGAAGgcatgaatgt ... tcctttgcagTTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAAC
EST: AGGGTTTTATTCTTGATGGCTTCCCCCGCACTGTTGTCCAAGCACAGAAG TTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAACEST: gi|162258566|gb|FC434781.1|FC434781
genomic: AGGGTTTTATTCTTGATGGCTTCCCCCGCACTGTTGTCCAAGCACAGAAGgcatgaatgt ... tcctttgcagTTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAAC
EST: AGGGTTTTATTCTTGATGGCTTCCCCCGCACTGTTGTCCAAGCACAGAAG TTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAACEST: gi|100431663|gb|BY960311.1|BY960311
genomic: AGGGTTTTATTCTTGATGGCTTCCCCCGCACTGTTGTCCAAGCACAGAAGgcatgaatgt ... tcctttgcagTTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAAC
EST: AGGGTTTTATTCTTGATGGCTTCCCCCGCACTGTTGTCCAAGCACAGGAG TTTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAA
genomic: AGGGTTTTATTCTTGATGGCTTCCCCCGCACTGTTGTCCAAGCACAGAAGgcatgaatgt ... tcctttgcagTT-GGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAA
caatggagttactagttttgtcaccgttagtgacatctaccgtgctcctttgcagTTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAACTTTGAGATTGAAGATTCTGTCCTTGAAGAGCGTATTACTGGGCGGTGGA
tgctccttt CT-rich tract
tagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgaatgttctaacctttctcttgaaaattttctggtttttagagttttatgatcggagctattagaagctcaatggagttactagttttgtcaccgttagtgacatctaccgtgctcctttgcagTTGGATGCCGCTCTTGAGAAGCAAGGCGTAAAGGTTGACAAGGTTCTGAACTTTGAGATTGAAGATTCTGTCCTTGAAGAGCGTATTACTGGGCGGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA