1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtccactttattacctacttttatcatgtctctcatgcctcgctttttatttgatccacctggtcatgatatcgcagggattggaacttctgtgaagattgatatgtctccgacatgtgtgcactacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTCGAACAAGCTTGCAAGAGTGCGGGGATGCCCATCGACATGCGCATACAAC
species | Physcomitrella patens |
transcript | PP1S61_17V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTCEST: gi|7067447|gb|AW497302.1|AW497302
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTCEST: gi|208380226|gb|DC919062.1|DC919062
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTCEST: gi|208381483|gb|DC919485.1|DC919485
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTCEST: gi|67727505|gb|BJ977764.1|BJ977764
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTCEST: gi|208348165|gb|DC920956.1|DC920956
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTCEST: gi|208396633|gb|DC924301.1|DC924301
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTCEST: gi|37822595|gb|BJ580661.1|BJ580661
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTCEST: gi|162192828|gb|FC370160.1|FC370160
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTCEST: gi|208364085|gb|DC943397.1|DC943397
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG GGTGACGCANATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAEST: gi|162261130|gb|FC437485.1|FC437485
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGA
EST: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTCEST: gi|162267024|gb|FC443073.1|FC443073
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTCEST: gi|67694518|gb|BJ954751.1|BJ954751
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTCEST: gi|37846788|gb|BJ604796.1|BJ604796
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTCEST: gi|37852990|gb|BJ610998.1|BJ610998
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTCEST: gi|208371948|gb|DC948351.1|DC948351
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: TGCTCGTAACGAAGTACAACGGCCCTAAAACAACCATCCTTATTGACCAG GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTCEST: gi|208385518|gb|DC953109.1|DC953109
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
gattggaacttctgtgaagattgatatgtctccgacatgtgtgcactacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTCGAACAAGCTTGCAAGAGTGCGGGGATGCCCATCGACATGCGCATACAAC
gattgat putative branch site (score: 4)
attgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccactttattacctacttttatcatgtctctcatgcctcgctttttatttgatccacctggtcatgatatcgcagggattggaacttctgtgaagattgatatgtctccgacatgtgtgcactacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTCGAACAAGCTTGCAAGAGTGCGGGGATGCCCATCGACATGCGCATACAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA