1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacgttactatcaatcattttcatttctaagttacacatcaggcgatcatctaatttcaattccctattattaggagcacgtactacatctgattaatcatgccaatttttcgcaagtcttcacgatgttttcatgttgacacctttcctcactatttgtacacgtgggttccccagGAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG
species | Physcomitrella patens |
transcript | PP1S61_17V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCAGCAGCTGCTCACGGCCTCGCGNTAGTTGCTATGGATACCTCCCCAC GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGEST: gi|67727505|gb|BJ977764.1|BJ977764
genomic: AGCAGCAGCTGCTCACGGCCTCGCGCTAGTTGCTATGGATACCTCCCCACgtacgttact ... ggttccccagGAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG
EST: TGGATACCTCCCCAC GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGEST: gi|208348165|gb|DC920956.1|DC920956
genomic: TGGATACCTCCCCACgtacgttact ... ggttccccagGAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG
EST: AGCAGCAGCTGCTCACGGCCTCGCGCTAGTTGCTATGGATACCTCCCCAC GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGEST: gi|208396633|gb|DC924301.1|DC924301
genomic: AGCAGCAGCTGCTCACGGCCTCGCGCTAGTTGCTATGGATACCTCCCCACgtacgttact ... ggttccccagGAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG
EST: AGCAGCAGNTGCTCACGGCCTCGCGNTAGGTGNTATGGATACCTCCCCAC GAGGGCTGAATGTGGNAGGGGAGTCGGATAGCTGGGATTTCGGCACAGEST: gi|208364085|gb|DC943397.1|DC943397
genomic: AGCAGCAGCTGCTCACGGCCTCGCGCTAGTTGCTATGGATACCTCCCCACgtacgttact ... ggttccccagGAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG
EST: AGCAGCAGCTGCTCACGGCCTCGCGCTAGTTGCTATGGATACCTCCCCAC GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGEST: gi|162192829|gb|FC370161.1|FC370161
genomic: AGCAGCAGCTGCTCACGGCCTCGCGCTAGTTGCTATGGATACCTCCCCACgtacgttact ... ggttccccagGAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG
EST: AGCAGCAGCTGCTCACGGCCTCGCGCTAGTTGCTATGGATACCTCCCCAC GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGEST: gi|208344728|gb|DC905177.1|DC905177
genomic: AGCAGCAGCTGCTCACGGCCTCGCGCTAGTTGCTATGGATACCTCCCCACgtacgttact ... ggttccccagGAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG
EST: AGCAGCAGCTGCTCACGGCCTCGCGCTAGTTGCTATGGATACCTCCCCAC GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGEST: gi|162267024|gb|FC443073.1|FC443073
genomic: AGCAGCAGCTGCTCACGGCCTCGCGCTAGTTGCTATGGATACCTCCCCACgtacgttact ... ggttccccagGAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG
EST: CTAGTTGCTATGGATACCTCCCCAC GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGEST: gi|67694518|gb|BJ954751.1|BJ954751
genomic: CTAGTTGCTATGGATACCTCCCCACgtacgttact ... ggttccccagGAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG
EST: AGCAGCAGCTGCTCACGGCCTCGCGCTAGTTGCTATGGATACCTCCCCAC GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGEST: gi|162267025|gb|FC443074.1|FC443074
genomic: AGCAGCAGCTGCTCACGGCCTCGCGCTAGTTGCTATGGATACCTCCCCACgtacgttact ... ggttccccagGAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG
EST: AGCAGCAGCTGCTCACGGCCTCGCGCTAGTTGCTATGGATACCTCCCCAC GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGEST: gi|18343395|gb|BJ175433.1|BJ175433
genomic: AGCAGCAGCTGCTCACGGCCTCGCGCTAGTTGCTATGGATACCTCCCCACgtacgttact ... ggttccccagGAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG
EST: AGCAGCAGCTGCTCACGGCCTCGCGCTAGTTGCTATGGATACCTCCCCAC GAGGGNTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGEST: gi|208371948|gb|DC948351.1|DC948351
genomic: AGCAGCAGCTGCTCACGGCCTCGCGCTAGTTGCTATGGATACCTCCCCACgtacgttact ... ggttccccagGAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG
EST: AGCAGCAGCTGCTCACGGCCTCGCGNTAGTTGCTATGGATACCTCCCCAC GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG
genomic: AGCAGCAGCTGCTCACGGCCTCGCGCTAGTTGCTATGGATACCTCCCCACgtacgttact ... ggttccccagGAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG
acgatgttttcatgttgacacctttcctcactatttgtacacgtgggttccccagGAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG
tcctcac putative branch site (score: 2)
ttcccc putative PPT
tatttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttactatcaatcattttcatttctaagttacacatcaggcgatcatctaatttcaattccctattattaggagcacgtactacatctgattaatcatgccaatttttcgcaagtcttcacgatgttttcatgttgacacctttcctcactatttgtacacgtgggttccccagGAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG