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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgatggcatttcttgcatcagattactgagctttgtgtcttcgaatgtcgctaacactcggatctgtcgtgcgcaacgcatcccgcattctcggcagtagGGTCTCTGCGAGCTCATACACATTCCTCTGCCGACGCGGCTCCACTATCGTAACTCGCGCTGCGTCGGAGGGGAATCAGGTCGACAATATGGCTACTCCT

Basic information

species Physcomitrella patens
transcript PP1S61_17V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208364085|gb|DC943397.1|DC943397
EST:     GAACACCTTCGCCGCTGCTGTCGCCCTCCCGCATTGTAG                       
genomic: GAACACCTTCGCCGCTGCTGTCGCCCTCCCGCA-T-T-Ggtactaatcc ... tcggcagt
EST: gi|208344728|gb|DC905177.1|DC905177
EST:     CTCTCTCCCTCTCTGAACACCTTCGCCGCTGCTGTCGCCCTCCCGCATTGTAG                       
genomic: CTCTCTCCCTCTCTGAACACCTTCGCCGCTGCTGTCGCCCTCCCGCA-T-T-Ggtactaatcc ... tcggcagt
EST: gi|162267025|gb|FC443074.1|FC443074
EST:     CTCCCTCTCTGAACACCTTCGCCGCTGCTGTCGCCCTCCCGCATTGTAG                       
genomic: CTCCCTCTCTGAACACCTTCGCCGCTGCTGTCGCCCTCCCGCA-T-T-Ggtactaatcc ... tcggcagt
EST: gi|18343395|gb|BJ175433.1|BJ175433
EST:     CTCTCTGAACACCTTCGCCGCTGCTGTCGCCCTCCCGCATTG                         GGTCTCTGCGAGCTCATACACATTCCTCTGCCGACGCGGCTCCACTATCGT
genomic: CTCTCTGAACACCTTCGCCGCTGCTGTCGCCCTCCCGCATTGgtactaatcc ... tcggcagtagGGTCTCTGCGAGCTCATACACATTCCTCTGCCGACGCGGCTCCACTATCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcgctaacactcggatctgtcgtgcgcaacgcatcccgcattctcggcagtagGGTCTCTGCGAGCTCATACACATTCCTCTGCCGACGCGGCTCCACTATCGTAACTCGCGCTGCGTCGGAGGGGAATCAGGTCGACAATATGGCTACTCCT
   cgctaac  putative branch site (score: 2)
                                        cattctc  putative PPT