1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTAGGTGAGATAATCTCTAGGTTTGAGCGGAAAGGCTTTCAGCTCATAGGATTGAAGCTGTTCAAAACCCCTAAAGAGCTTGCAGAGgtgagcgttttatcacattaccgctggtgcaactggtagtttcgtggatgcgtgctggtcttgatggagattgataggcatgtccttcggttgaagtgaggagaaaccttacttaagtttctcaaacactttgcag
species | Physcomitrella patens |
transcript | PP1S56_113V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCAGCTCATAGGATTGAAGCTGTTCAAAACCCCTAAAGAGCTTGCAGAG GAGCACTACGGGGAATTAAAGGAGAAACCATTTTACGGAAAGCTCGTTGCCEST: gi|162230181|gb|FC406329.1|FC406329
genomic: TTCAGCTCATAGGATTGAAGCTGTTCAAAACCCCTAAAGAGCTTGCAGAGgtgagcgttt ... cactttgcagGAGCACTACGGGGAATTAAAGGAGAAACCATTTTACGGAAAGCTCGTTGCC
EST: TTCAGCTCATAGGATTGAAGCTGTTCAAAACCCCTAAAGAGCTTGCAGAG GAGCACTACGGGGAATTAAAGGAGAAACCATTTTACGGAAAGCTCGTTGCCEST: gi|162216270|gb|FC392687.1|FC392687
genomic: TTCAGCTCATAGGATTGAAGCTGTTCAAAACCCCTAAAGAGCTTGCAGAGgtgagcgttt ... cactttgcagGAGCACTACGGGGAATTAAAGGAGAAACCATTTTACGGAAAGCTCGTTGCC
EST: TTCAGCTCATAGGATTGAAGCTGTTCAAAACCCCTAAAGAGCTTGCAGAG GAGCACTACGGGGAATTAAAGGAGAAACCATTTTACGGAAAGCTCGTTGCC
genomic: TTCAGCTCATAGGATTGAAGCTGTTCAAAACCCCTAAAGAGCTTGCAGAGgtgagcgttt ... cactttgcagGAGCACTACGGGGAATTAAAGGAGAAACCATTTTACGGAAAGCTCGTTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGGTGAGATAATCTCTAGGTTTGAGCGGAAAGGCTTTCAGCTCATAGGATTGAAGCTGTTCAAAACCCCTAAAGAGCTTGCAGAGgtgagcgttttatcacattaccgctggtgcaactggtagtttcgtggatgcgtgctggtcttgatggagattgataggcatgtccttcggttgaagtgaggagaaaccttacttaagtttctcaaacactttgcag
- - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT