1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tacaatctattgctacagctctagttttgagttggatttggaatacagtgggaagggcgtctttcagatagctcgttgttgttactcgccaatgattcagGGTGAAAGCGAGAGGAGCTACGTGATGGTGAAACCAGACGGCGTTCAGCGTGGCCTT
species | Physcomitrella patens |
transcript | PP1S56_113V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCATTTCGTCGACCCGTGGCTCCGTCTCTCCGCGTCTACGCTGCGCAG GGTGAAAGCGAGAGGAGCTACGTGATGGTGAAACCAGACGGCGTTCAGCGTEST: gi|162230181|gb|FC406329.1|FC406329
genomic: TTTCATTTCGTCGACCCGTGGCTCCGTCTCTCCGCGTCTACGCTGCGCAGgttcgtttcg ... aatgattcagGGTGAAAGCGAGAGGAGCTACGTGATGGTGAAACCAGACGGCGTTCAGCGT
EST: TTTCATTTCGTCGACCCGTGGCTCCATCTCTCCGCGTCTACGCTGCGCAG GGTGAAAGCGAGAGGAGCTACGTGATGGTGAAACCAGACGGCGTTCAGCGTEST: gi|162216270|gb|FC392687.1|FC392687
genomic: TTTCATTTCGTCGACCCGTGGCTCCGTCTCTCCGCGTCTACGCTGCGCAGgttcgtttcg ... aatgattcagGGTGAAAGCGAGAGGAGCTACGTGATGGTGAAACCAGACGGCGTTCAGCGT
EST: TTTCGTTTCGTCGACCCGTGGCTCCGTCTCTCCGCGTCTACGCTGCGCAG GGTGAAAGCGAGAGGAGCTACGTGATGGTGAAACCAGACGGCGTTCAGCGT
genomic: TTTCATTTCGTCGACCCGTGGCTCCGTCTCTCCGCGTCTACGCTGCGCAGgttcgtttcg ... aatgattcagGGTGAAAGCGAGAGGAGCTACGTGATGGTGAAACCAGACGGCGTTCAGCGT
cagtgggaagggcgtctttcagatagctcgttgttgttactcgccaatgattcagGGTGAAAGCGAGAGGAGCTACGTGATGGTGAAACCAGACGGCGTTCAGCGTGGCCTT
aatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaatctattgctacagctctagttttgagttggatttggaatacagtgggaagggcgtctttcagatagctcgttgttgttactcgccaatgattcagGGTGAAAGCGAGAGGAGCTACGTGATGGTGAAACCAGACGGCGTTCAGCGTGGCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - tgctaca