1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTCACCCTAAGATCCTCGGTGGCATGTTCTTCTTCTTCTCCGCCGGCGCAGTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCAATTTTTGAGAGgtacggtgatcgaacctgtctgacatcgtactcgattcccaacagtagtaacgccaattcttcacttctgtgggtcctgtaactgcaaacaactgaaaga...
species | Physcomitrella patens |
transcript | PP1S567_14V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCGATTTTTGAGAG TCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAACEST: gi|208390909|gb|DC942227.1|DC942227
genomic: GTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCAATTTTTGAGAGgtacggtgat ... tgtgtggcagTCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAAC
EST: GTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCAATTTTTGAGAG TCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAACEST: gi|67698515|gb|BJ958748.1|BJ958748
genomic: GTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCAATTTTTGAGAGgtacggtgat ... tgtgtggcagTCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAAC
EST: GTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCAATTTTTGAGAG TCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAACEST: gi|162219881|gb|FC396696.1|FC396696
genomic: GTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCAATTTTTGAGAGgtacggtgat ... tgtgtggcagTCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAAC
EST: GTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCAATTTTTGAGAG TCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAACEST: gi|67575066|gb|BJ947890.1|BJ947890
genomic: GTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCAATTTTTGAGAGgtacggtgat ... tgtgtggcagTCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAAC
EST: GTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCAATTTTTGAGAG TCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAAC
genomic: GTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCAATTTTTGAGAGgtacggtgat ... tgtgtggcagTCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCACCCTAAGATCCTCGGTGGCATGTTCTTCTTCTTCTCCGCCGGCGCAGTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCAATTTTTGAGAGgtacggtgatcgaacctgtctgacatcgtactcgattcccaacagtagtaacgccaattcttcacttctgtgggtcctgtaactgcaaacaactgaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG