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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgctctgcgaagccctaatcgcaaatcctctagcaatgcatctttatcttgaaattttcatcccgccgtgccatgctcacctcacggtattgtgtggcagTCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAACAGCCGTCTCCACCCAATTTCAG

Basic information

species Physcomitrella patens
transcript PP1S567_14V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208388939|gb|DC932967.1|DC932967
EST:     GTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCGATTTTTGAGAG                         TCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAAC
genomic: GTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCAATTTTTGAGAGgtacggtgat ... tgtgtggcagTCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAAC
EST: gi|208390909|gb|DC942227.1|DC942227
EST:     GTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCAATTTTTGAGAG                         TCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAAC
genomic: GTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCAATTTTTGAGAGgtacggtgat ... tgtgtggcagTCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAAC
EST: gi|67698515|gb|BJ958748.1|BJ958748
EST:     GTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCAATTTTTGAGAG                         TCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAAC
genomic: GTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCAATTTTTGAGAGgtacggtgat ... tgtgtggcagTCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAAC
EST: gi|162219881|gb|FC396696.1|FC396696
EST:     GTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCAATTTTTGAGAG                         TCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAAC
genomic: GTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCAATTTTTGAGAGgtacggtgat ... tgtgtggcagTCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAAC
EST: gi|67575066|gb|BJ947890.1|BJ947890
EST:     GTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCAATTTTTGAGAG                         TCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAAC
genomic: GTTGGAGGCATCACATCGCTCGTCACATCCGGCAAACCAATTTTTGAGAGgtacggtgat ... tgtgtggcagTCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttgaaattttcatcccgccgtgccatgctcacctcacggtattgtgtggcagTCCCCATGCCGTAACAGGTTTTTTGGGCCTTGCCCTTCTCAGCGTGCAAACAGCCGTCTCCACCCAATTTCAG
      aaattttcat  TA-rich tract