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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatcacaatgccgagttttgatgataatagcgctgcacttgcactcgaagcttgctcttttctgcaacctctcaattagattggtgaggcttgcaaagtgggatgtgggttcaatggttactgacggaaaggcgattcattcgtttggctgcagATGTCGAAACGGGGTCTTTCACGTTGTGAACAACAACTACGAAGGGTGGGGAATGTACGCCATCGGAGGGAGTGCGTTTCCAACAATCAATAGCGAGGGC

Basic information

species Physcomitrella patens
transcript PP1S563_1V6.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208394878|gb|DC915643.1|DC915643
EST:     ACCG-GGCTTTCAACCA-TTCGGCAAAAATCTAG-TGAGCGGATGCCAAG                         ATGTCGAAAC-GGGTCTTTCACGTTGTGAACAACAACTACGAAGGGTGGGG
genomic: ACCGTGGCTTTCAACCATTTCGGCAAAAATCTAGTTGAGCGGATGCCAAGgtgatcacaa ... ttggctgcagATGTCGAAACGGGGTCTTTCACGTTGTGAACAACAACTACGAAGGGTGGGG
EST: gi|208379492|gb|DC911103.1|DC911103
EST:     ACCGTGGCTTTCAACCATTTCGGCAAAAATCTAGTTGAGCGGATGCCAAG                         ATGTCNAAACGGGGTCTTTCACGTTGTGAACAACAACTACGAAGGGTGGGG
genomic: ACCGTGGCTTTCAACCATTTCGGCAAAAATCTAGTTGAGCGGATGCCAAGgtgatcacaa ... ttggctgcagATGTCGAAACGGGGTCTTTCACGTTGTGAACAACAACTACGAAGGGTGGGG
EST: gi|208381592|gb|DC915458.1|DC915458
EST:     AAAATCTAGTT-AGCGGATGCCAAG                         ATGTCGAAAC-GGGTCTTTCACGNTGTGAACAACAACTACGAAGGGTGGGG
genomic: AAAATCTAGTTGAGCGGATGCCAAGgtgatcacaa ... ttggctgcagATGTCGAAACGGGGTCTTTCACGTTGTGAACAACAACTACGAAGGGTGGGG
EST: gi|208379611|gb|DC927108.1|DC927108
EST:     CCNGTGGCTTTCAACCATTTCGGCAAAAATCTAGTTGAGCGGATGCCAAG                         ATGTCGAAACGGGGTCTTTTCACGTTGTGAACAACAACTACGAAGGGTGGG
genomic: CC-GTGGCTTTCAACCATTTCGGCAAAAATCTAGTTGAGCGGATGCCAAGgtgatcacaa ... ttggctgcagATGTCGAAACGGGGTC-TTTCACGTTGTGAACAACAACTACGAAGGGTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggatgtgggttcaatggttactgacggaaaggcgattcattcgtttggctgcagATGTCGAAACGGGGTCTTTCACGTTGTGAACAACAACTACGAAGGGTGGGGAATGTACGCCATCGGAGGGAGTGCGTTTCCAACAATCAATAGCGAGGGC
                   tactgac  putative branch site (score: 1)
                                        ttcgttt  putative PPT
                                   attcatt  TA-rich tract