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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGGCCTTTGACCTCATTCTCGGCGTCTCAGGTGCCGGAAGAGCATCAGACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagtgagcatcttaacagactcctggagagcggtccagggcaaatcattttttcagagaactgcgcttattttgcagctttctctattccgccg...

Basic information

species Physcomitrella patens
transcript PP1S563_1V6.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100446044|gb|CJ970343.1|CJ970343
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100435443|gb|BY979247.1|BY979247
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|67717475|gb|BJ967734.1|BJ967734
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCCGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|67709422|gb|BJ965238.1|BJ965238
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100384663|gb|BY950653.1|BY950653
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|67703305|gb|BJ963538.1|BJ963538
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCCGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAG
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAG
EST: gi|100428757|gb|BY959418.1|BY959418
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100375322|gb|BY948839.1|BY948839
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100420010|gb|BY975932.1|BY975932
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100449025|gb|CJ973324.1|CJ973324
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100447253|gb|CJ971552.1|CJ971552
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100374662|gb|BY949011.1|BY949011
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100414562|gb|BY956753.1|BY956753
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|67709991|gb|BJ965807.1|BJ965807
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100392845|gb|BY971910.1|BY971910
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CN--TC-AACAGTACCCGCCGCTCTCTGGGGAG-CTGTGGAACAGGCAACC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGG-AGGCTGTGGAACAGGCAACC
EST: gi|100384009|gb|BY950395.1|BY950395
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|67710240|gb|BJ965903.1|BJ965903
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTC-G                         --GCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100417441|gb|BY957332.1|BY957332
EST:     ACCTCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100436673|gb|BY979468.1|BY979468
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100402839|gb|BY973377.1|BY973377
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100384825|gb|BY969560.1|BY969560
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         --GCTC-AACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|208350056|gb|DC910291.1|DC910291
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100433788|gb|BY960707.1|BY960707
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|67717456|gb|BJ967715.1|BJ967715
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100378872|gb|BY968731.1|BY968731
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100373190|gb|BY949248.1|BY949248
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100388499|gb|BY952101.1|BY952101
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100360531|gb|BY984156.1|BY984156
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|208350272|gb|DC901628.1|DC901628
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|208345958|gb|DC901815.1|DC901815
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|67704805|gb|BJ965038.1|BJ965038
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100371985|gb|BY967649.1|BY967649
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|67717211|gb|BJ967470.1|BJ967470
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|208346699|gb|DC913345.1|DC913345
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100446132|gb|CJ970431.1|CJ970431
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100430630|gb|BY978316.1|BY978316
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100360224|gb|BY966077.1|BY966077
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100446147|gb|CJ970446.1|CJ970446
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100359145|gb|BY965613.1|BY965613
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100432505|gb|BY960490.1|BY960490
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100436306|gb|BY961151.1|BY961151
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGGACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100449411|gb|CJ973710.1|CJ973710
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|67716183|gb|BJ966443.1|BJ966443
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100431972|gb|BY978600.1|BY978600
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100417898|gb|BY993239.1|BY993239
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100407971|gb|BY955859.1|BY955859
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         C---TCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100414588|gb|BY956766.1|BY956766
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTNGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
EST: gi|100433093|gb|BY978806.1|BY978806
EST:     ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGG                         CAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC
genomic: ACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagt ... tgcaatgcagCAGCTCCAACAGTACCCGCCGCTCTCTGGGAGGCTGTGGAACAGGCAACCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCGGCCTTTGACCTCATTCTCGGCGTCTCAGGTGCCGGAAGAGCATCAGACCCCCGTCGGAGTTGCAGAAAGCAAGGACGAAGAGCCTGCTGAACTCGGgtaagggagtgagcatcttaacagactcctggagagcggtccagggcaaatcattttttcagagaactgcgcttattttgcagctttctctattccgccg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA