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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgaccagttatcgtcgtgctgctgtcatgagcaaaagctgtaggaccaacgaacatgtgcttgccatcactaacgaacaccctgttttagaaacttttgactaagtctctgtggcttctgtcgattaccggagacggtgtggtgaactgactgattggtaatgtggattgttgaacattgtgcagTGGATCTATTGGGTGGGTCCATTCCTGGGAGCTGCTTTGGCCGCCGCTTACCACCAATATGTGCTTAGAGCTGGTCCTTTCAAGTCTCTGGGCTCCTTCC

Basic information

species Physcomitrella patens
transcript PP1S55_301V6.4
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67720457|gb|BJ970716.1|BJ970716
EST:     GCTTTGGCGCCGCTGTCATCTACAACCGCAGCAAGCCTTGGAATGACCAC                         TGGATCTATTGGGTGGGTCCATTCCTGGGAGCTGCTTTGGCCGCCGCTTAC
genomic: GCTTTGGCGCCGCTGTCATCTACAACCGCAGCAAGCCTTGGAATGACCACgtaagttgac ... cattgtgcagTGGATCTATTGGGTGGGTCCATTCCTGGGAGCTGCTTTGGCCGCCGCTTAC
EST: gi|162179614|gb|FC355256.1|FC355256
EST:     GCTTTGGCGCCGCTGTCATCTACAACCGCAGCAAGCCTTGGAATGACCAC                         TGGATCTATTGGGTGGGTCCATTCCTGGGAGCTGCTTTGGCCGCCGCTTAC
genomic: GCTTTGGCGCCGCTGTCATCTACAACCGCAGCAAGCCTTGGAATGACCACgtaagttgac ... cattgtgcagTGGATCTATTGGGTGGGTCCATTCCTGGGAGCTGCTTTGGCCGCCGCTTAC
EST: gi|100442334|gb|BY981358.1|BY981358
EST:     GCTTTGGCGCCGCTGTCATCTACAACCGCAGCAAGCCTTGGAATGACCAC                         TGGATCTATTGGGTGGGTCCATTCCTGGGAGCTGCTTTGGNCGCCGCTTAC
genomic: GCTTTGGCGCCGCTGTCATCTACAACCGCAGCAAGCCTTGGAATGACCACgtaagttgac ... cattgtgcagTGGATCTATTGGGTGGGTCCATTCCTGGGAGCTGCTTTGGCCGCCGCTTAC
EST: gi|162158203|gb|FC335246.1|FC335246
EST:     GCTTTGGCGCCGCTGTCATCTACAACCGCAGCAAGCCTTGGAATGACCAC                         TGGATCTATTGGGTGGGTCCATTCCTGGGAGCTGCTTTGGCCGCCGCTTAC
genomic: GCTTTGGCGCCGCTGTCATCTACAACCGCAGCAAGCCTTGGAATGACCACgtaagttgac ... cattgtgcagTGGATCTATTGGGTGGGTCCATTCCTGGGAGCTGCTTTGGCCGCCGCTTAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttgaccagttatcgtcgtgctgctgtcatgagcaaaagctgtaggaccaacgaacatgtgcttgccatcactaacgaacaccctgttttagaaacttttgactaagtctctgtggcttctgtcgattaccggagacggtgtggtgaactgactgattggtaatgtggattgttgaacattgtgcagTGGATCTATTGGGTGGGTCCATTCCTGGGAGCTGCTTTGGCCGCCGCTTACCACCAATATGTGCTTAGAGCTGGTCCTTTCAAGTCTCTGGGCTCCTTCC

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