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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAGGACTAGCCGCCGAGATCATCGGAACGTTTGTTCTAGTGTACACCGTCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttcaatgcactagaccagcgattgttctaggtgttaagcatggggatctgtgaacaccgacgacggtgtctcaagtgatagacgctagcaaca...

Basic information

species Physcomitrella patens
transcript PP1S55_301V6.4
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100390297|gb|BY952705.1|BY952705
EST:     TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCG                         GTGTTGGCTCCCTCTTCC-ATAGGATTTGCGGTGTTCATGGTTCATTTGGC
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCC-TCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGC
EST: gi|100385906|gb|BY951100.1|BY951100
EST:     CTTCTCTGCCACAGACCCCAAGCGCCATGCTCGTGGAT-CTCATGTGCCG                         GTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGGTCATTTGGCA
genomic: CTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTG-ATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
EST: gi|208352229|gb|DC906318.1|DC906318
EST:     TCTTCTCTGCCACAGACCC-AAGCGCAATGCTCGTGATTCTCATGTGCCG                         GTGTGGGCTC-TCTTCC
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCC
EST: gi|67720457|gb|BJ970716.1|BJ970716
EST:     TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCG                         GTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
EST: gi|162181095|gb|FC357267.1|FC357267
EST:     TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCG                         GTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
EST: gi|208349547|gb|DC905657.1|DC905657
EST:     TCTTCTCTGCCACANACCC-AAGCGCAATGCTCGTGACTCTCATGTGCCG                         GTGTTGGCTCCTCTTCC-ATAGG
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGG
EST: gi|162181259|gb|FC357041.1|FC357041
EST:     TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCG                         GTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
EST: gi|162179614|gb|FC355256.1|FC355256
EST:     TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCG                         GTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
EST: gi|208352340|gb|DC906151.1|DC906151
EST:     TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCG                         GTGTTGGCTCCTCTTCCCATAGGATTT
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTT
EST: gi|100446330|gb|CJ970629.1|CJ970629
EST:     TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCG                         GTGTTGGCTCCTCTTCCCATAGGANTTGCGGTG
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTG
EST: gi|208347989|gb|DC905312.1|DC905312
EST:     TCTTCTCTGCCACAGACCC-AAGCGCAATGCTCGTGATTCTCATGTGCCG                         GTGTTGGCTCCTCTT
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTT
EST: gi|208362526|gb|DC931003.1|DC931003
EST:     TCTTCTCTGCCACAGACCC-AAGCGCA-TGCTCGTGATN-TCATGTGCCG                         GTGTTGGCTCCTCT
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCT
EST: gi|208377070|gb|DC910844.1|DC910844
EST:     TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCG                         GTGTTGGCTCCTCTTCCCATANGATTTGCGGTGTTCATGGTTCATTTGGCA
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
EST: gi|162246016|gb|FC424388.1|FC424388
EST:     TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCG                         GTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
EST: gi|100442334|gb|BY981358.1|BY981358
EST:     TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCG                         GTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
EST: gi|162158203|gb|FC335246.1|FC335246
EST:     TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCG                         GTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA
genomic: TCTTCTCTGCCACAGACCCCAAGCGCAATGCTCGTGATTCTCATGTGCCGgtaagacttc ... tgctccgcagGTGTTGGCTCCTCTTCCCATAGGATTTGCGGTGTTCATGGTTCATTTGGCA