Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCGAAATGCTGGCTGTGATGGGGTGGGACTTCTTGGCATCGCATGGGCTTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagggctgatcattacaagctcaaagtcgtcgatgagctctttggaagactagcagaggaccacagattgaatcccagtggtgaaccctccaga...

Basic information

species Physcomitrella patens
transcript PP1S55_301V6.4
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18358280|gb|BJ190339.1|BJ190339
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100438906|gb|BY961863.1|BY961863
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|18372502|gb|BJ204104.1|BJ204104
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGG
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGG
EST: gi|100390297|gb|BY952705.1|BY952705
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100442585|gb|BY963279.1|BY963279
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100360672|gb|BY984088.1|BY984088
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100387310|gb|BY970454.1|BY970454
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100444258|gb|BY982287.1|BY982287
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100420521|gb|BY976060.1|BY976060
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100385906|gb|BY951100.1|BY951100
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|208345005|gb|DC909423.1|DC909423
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100357914|gb|BY965377.1|BY965377
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|208352229|gb|DC906318.1|DC906318
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100452160|gb|CJ975130.1|CJ975130
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100365805|gb|BY967155.1|BY967155
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100366730|gb|BY985250.1|BY985250
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100380006|gb|BY968799.1|BY968799
EST:     CTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|18372556|gb|BJ204158.1|BJ204158
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|208346328|gb|DC909578.1|DC909578
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|18349480|gb|BJ181529.1|BJ181529
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|208375588|gb|DC902805.1|DC902805
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|208348634|gb|DC913278.1|DC913278
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|18366517|gb|BJ198596.1|BJ198596
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGGTTACGTTCGG
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTG-TTACGTTCGG
EST: gi|18362308|gb|BJ194378.1|BJ194378
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTTGTTACGTTCGGC
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCT-GTTACGTTCGGC
EST: gi|67720457|gb|BJ970716.1|BJ970716
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100448690|gb|CJ972989.1|CJ972989
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|162181095|gb|FC357267.1|FC357267
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|18354976|gb|BJ187035.1|BJ187035
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100364079|gb|BY966704.1|BY966704
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100389575|gb|BY952381.1|BY952381
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100449944|gb|CJ974015.1|CJ974015
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|162218687|gb|FC394237.1|FC394237
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100380353|gb|BY986670.1|BY986670
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|208349547|gb|DC905657.1|DC905657
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|162181259|gb|FC357041.1|FC357041
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100425417|gb|BY958584.1|BY958584
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|18368050|gb|BJ200134.1|BJ200134
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGC
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGC
EST: gi|162179614|gb|FC355256.1|FC355256
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100415103|gb|BY975165.1|BY975165
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|208393609|gb|DC904325.1|DC904325
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|18328126|gb|BJ160130.1|BJ160130
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAAT
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAAT
EST: gi|100393459|gb|BY953409.1|BY953409
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|18328615|gb|BJ160620.1|BJ160620
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100354576|gb|BY983458.1|BY983458
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCCGTATCTCAT                         GAGGTCATATTAATCCAGCTGTTACGCTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100397311|gb|BY972435.1|BY972435
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100391254|gb|BY971564.1|BY971564
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|18342754|gb|BJ174789.1|BJ174789
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|18359511|gb|BJ191572.1|BJ191572
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCANCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|18364212|gb|BJ196285.1|BJ196285
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTTGTTACGTTCGGCTTGCT
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCT-GTTACGTTCGGCTTGCT
EST: gi|100442608|gb|BY963302.1|BY963302
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|208352340|gb|DC906151.1|DC906151
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100446330|gb|CJ970629.1|CJ970629
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|18361088|gb|BJ193152.1|BJ193152
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100442844|gb|BY963339.1|BY963339
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|208347989|gb|DC905312.1|DC905312
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|208362526|gb|DC931003.1|DC931003
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|208377070|gb|DC910844.1|DC910844
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|208352910|gb|DC913836.1|DC913836
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100427188|gb|BY959019.1|BY959019
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAA                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100385379|gb|BY950971.1|BY950971
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|18362897|gb|BJ194969.1|BJ194969
EST:     TTTGGAGGCATGATTTTCGTGCCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAAT
genomic: TTTGGAGGCATGATTTTCGTGC-TGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAAT
EST: gi|162246016|gb|FC424388.1|FC424388
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|208354238|gb|DC902466.1|DC902466
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACNCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100442334|gb|BY981358.1|BY981358
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100384224|gb|BY969355.1|BY969355
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|208350044|gb|DC910279.1|DC910279
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100435793|gb|BY961093.1|BY961093
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100388422|gb|BY952024.1|BY952024
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|100428364|gb|BY977768.1|BY977768
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|162203409|gb|FC379636.1|FC379636
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
EST: gi|208375617|gb|DC902834.1|DC902834
EST:     TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAG                         GAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA
genomic: TTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagg ... aatttgacagGAGGTCATATTAATCCAGCTGTTACGTTCGGCTTGCTGTTGGCACGCAAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCGAAATGCTGGCTGTGATGGGGTGGGACTTCTTGGCATCGCATGGGCTTTTGGAGGCATGATTTTCGTGCTGGTGTACTGCACCGCCGGTATCTCAGgtacacgagggctgatcattacaagctcaaagtcgtcgatgagctctttggaagactagcagaggaccacagattgaatcccagtggtgaaccctccaga

- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG