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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttcaatttcacatggagatttgaacttaacatggactgcgtgtgtcctcatgtcgttgagtagatactttgtacgtcatttaacaaattaattcaaactagccgtgtgttgttaaaatcatgaatcattgcaattcattgacccatcttaacgtgttcgtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGGTTGGCTGCCGTTCACAAGAGCTTGCGTGTAGCCAAGGCTGGTGTCACCA

Basic information

species Physcomitrella patens
transcript PP1S505_8V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162264474|gb|FC441134.1|FC441134
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162207236|gb|FC383273.1|FC383273
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162211642|gb|FC387930.1|FC387930
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162263581|gb|FC439584.1|FC439584
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162207235|gb|FC383272.1|FC383272
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|37833401|gb|BJ591413.1|BJ591413
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|67701114|gb|BJ961347.1|BJ961347
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|15261902|gb|BI437212.1|BI437212
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162211641|gb|FC387929.1|FC387929
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162215339|gb|FC391107.1|FC391107
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|67508237|gb|BJ941107.1|BJ941107
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|18361796|gb|BJ193863.1|BJ193863
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|67701278|gb|BJ961511.1|BJ961511
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|15261976|gb|BI437286.1|BI437286
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|7046933|gb|AW476770.1|AW476770
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTNTGGCCCAG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCC-AG
EST: gi|15728347|gb|BI740742.1|BI740742
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|18356467|gb|BJ188526.1|BJ188526
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162243382|gb|FC417083.1|FC417083
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|67578246|gb|BJ950413.1|BJ950413
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|37835360|gb|BJ593372.1|BJ593372
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|208383426|gb|DC911178.1|DC911178
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|67695859|gb|BJ956092.1|BJ956092
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162232418|gb|FC408839.1|FC408839
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162211308|gb|FC387538.1|FC387538
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|67698696|gb|BJ958929.1|BJ958929
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162230445|gb|FC407386.1|FC407386
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|67691456|gb|BJ951689.1|BJ951689
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|7286665|gb|AW599152.1|AW599152
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAAGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|22131641|gb|BQ826718.1|BQ826718
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162263582|gb|FC439585.1|FC439585
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162207727|gb|FC383812.1|FC383812
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162280378|gb|FC456083.1|FC456083
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|37850552|gb|BJ608560.1|BJ608560
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162263988|gb|FC439231.1|FC439231
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162268358|gb|FC444127.1|FC444127
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|67572588|gb|BJ945412.1|BJ945412
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|15261356|gb|BI436666.1|BI436666
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162230444|gb|FC407385.1|FC407385
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|19790693|gb|BQ042006.1|BQ042006
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|19789300|gb|BQ041225.1|BQ041225
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|18328628|gb|BJ160633.1|BJ160633
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|67572487|gb|BJ945311.1|BJ945311
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162265536|gb|FC441044.1|FC441044
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|37845169|gb|BJ603177.1|BJ603177
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|67572525|gb|BJ945349.1|BJ945349
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162207728|gb|FC383813.1|FC383813
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|18353888|gb|BJ185943.1|BJ185943
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162258010|gb|FC434104.1|FC434104
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162237366|gb|FC412669.1|FC412669
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162211309|gb|FC387539.1|FC387539
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|7647920|gb|AW738903.1|AW738903
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|67578387|gb|BJ950554.1|BJ950554
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|208355302|gb|DC929777.1|DC929777
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|208370937|gb|DC944312.1|DC944312
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|7582893|gb|AW698998.1|AW698998
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162266388|gb|FC443243.1|FC443243
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|15728866|gb|BI741018.1|BI741018
EST:     CTCTTTTGAAGAAAGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|67695898|gb|BJ956131.1|BJ956131
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162201871|gb|FC377805.1|FC377805
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162236150|gb|FC411958.1|FC411958
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|67695962|gb|BJ956195.1|BJ956195
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
EST: gi|162280379|gb|FC456084.1|FC456084
EST:     CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAG                         GTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG
genomic: CTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 68

CACAACCAAAACCAAGAAGAGATCTCAACCCGCGAAGTCGAGTCACAACTCTCTTTTGAAGAAGGATTTCCGCAAGATGGCGAAGGCTGTTGTCAACCAGgtacttcaat ... gtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGGTTGGCTGCCGTTCACAAGAGCTTGCGTGTAGCCAAGGCTGGTGTCACCA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatcatgaatcattgcaattcattgacccatcttaacgtgttcgtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGGTTGGCTGCCGTTCACAAGAGCTTGCGTGTAGCCAAGGCTGGTGTCACCA
                                tcttaac  putative branch site (score: 68)
                  aattcatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacttcaatttcacatggagatttgaacttaacatggactgcgtgtgtcctcatgtcgttgagtagatactttgtacgtcatttaacaaattaattcaaactagccgtgtgttgttaaaatcatgaatcattgcaattcattgacccatcttaacgtgttcgtggacacagGTCGCCACTAATGGGTACAGGGCCGATTTGAAGTCAGCTGCTTTGGCCAGGTTGGCTGCCGTTCACAAGAGCTTGCGTGTAGCCAAGGCTGGTGTCACCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT