Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAGGTTCTTGGTGAAGATGAATGGGAACAACAGCAACAGTGTTCAATTCAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctcgcacacatattactggatgtggcgggccttgatcttcgtttgttattatctcaggtatggttccgaatctcaattgttggttgacttacag

Basic information

species Physcomitrella patens
transcript PP1S505_8V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162264474|gb|FC441134.1|FC441134
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162207236|gb|FC383273.1|FC383273
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162211642|gb|FC387930.1|FC387930
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162263581|gb|FC439584.1|FC439584
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162207235|gb|FC383272.1|FC383272
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|37833401|gb|BJ591413.1|BJ591413
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|67701114|gb|BJ961347.1|BJ961347
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|15261902|gb|BI437212.1|BI437212
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAT
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162211641|gb|FC387929.1|FC387929
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162215339|gb|FC391107.1|FC391107
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|67508237|gb|BJ941107.1|BJ941107
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|18361796|gb|BJ193863.1|BJ193863
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|67701278|gb|BJ961511.1|BJ961511
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|7046933|gb|AW476770.1|AW476770
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|18356467|gb|BJ188526.1|BJ188526
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|67578246|gb|BJ950413.1|BJ950413
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|37835360|gb|BJ593372.1|BJ593372
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|208383426|gb|DC911178.1|DC911178
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|67695859|gb|BJ956092.1|BJ956092
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162232418|gb|FC408839.1|FC408839
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162211308|gb|FC387538.1|FC387538
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|67698696|gb|BJ958929.1|BJ958929
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162230445|gb|FC407386.1|FC407386
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|67691456|gb|BJ951689.1|BJ951689
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|22131641|gb|BQ826718.1|BQ826718
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162263582|gb|FC439585.1|FC439585
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162207727|gb|FC383812.1|FC383812
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162280378|gb|FC456083.1|FC456083
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|37850552|gb|BJ608560.1|BJ608560
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162263988|gb|FC439231.1|FC439231
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162268358|gb|FC444127.1|FC444127
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|67572588|gb|BJ945412.1|BJ945412
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162230444|gb|FC407385.1|FC407385
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|18328628|gb|BJ160633.1|BJ160633
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|67572487|gb|BJ945311.1|BJ945311
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162265536|gb|FC441044.1|FC441044
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|37845169|gb|BJ603177.1|BJ603177
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|67572525|gb|BJ945349.1|BJ945349
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162207728|gb|FC383813.1|FC383813
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|18353888|gb|BJ185943.1|BJ185943
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162258010|gb|FC434104.1|FC434104
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162237366|gb|FC412669.1|FC412669
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162211309|gb|FC387539.1|FC387539
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|67578387|gb|BJ950554.1|BJ950554
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|208355302|gb|DC929777.1|DC929777
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|208370937|gb|DC944312.1|DC944312
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162266388|gb|FC443243.1|FC443243
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|15728866|gb|BI741018.1|BI741018
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|67695898|gb|BJ956131.1|BJ956131
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162201871|gb|FC377805.1|FC377805
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162236150|gb|FC411958.1|FC411958
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|67695962|gb|BJ956195.1|BJ956195
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
EST: gi|162280379|gb|FC456084.1|FC456084
EST:     CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAG                         GGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG
genomic: CAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 20

AATAGGTTCTTGGTGAAGATGAATGGGAACAACAGCAACAGTGTTCAATTCAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctc ... tgacttacagGGTTGGCAAACAAGAAAACTGTGGCCATTGCACCTAGTGAGGGTCTTTCAGTGCTCCTGACCACAACCAAAACCAAGAAGAGATCTCAACCCGCGAAGTC




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATAGGTTCTTGGTGAAGATGAATGGGAACAACAGCAACAGTGTTCAATTCAGCTCAGAGCCCAACAACCTTTACAACTTGAATACCTTCAAGCACTCAGgttccctctcgcacacatattactggatgtggcgggccttgatcttcgtttgttattatctcaggtatggttccgaatctcaattgttggttgacttacag

- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA