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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCAGAACATCTATGGCGGATGATTTGAATACCCCTGTGGTCGTGGCATCTTTCTCGGAATCTTTCAAGTTCATGAATGATCTTATGCATACTCGCAAGgtacgataaatcatgttcttgtccttaaaagcttagtcctcttaaaggttcgtggtgtatgctgcatggttcttatgtaaaatcagtcatacaacttgatcaatcaattatctttgaatatcattgaaattccacttttgaattataactttttcag

Basic information

species Physcomitrella patens
transcript PP1S504_12V6.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37834846|gb|BJ592858.1|BJ592858
EST:     CTTTCTCGGAATCTTTCAAGTTCATGAATGATCTTATGCATACTCGCAAG                         GGCCGCAAGGACAAAACTCGTCTGGTATCATTACAGCTGCTCATAACTGAA
genomic: CTTTCTCGGAATCTTTCAAGTTCATGAATGATCTTATGCATACTCGCAAGgtacgataaa ... actttttcagGGCCGCAAGGACAAAACTCGTCTGGTATCATTACAGCTGCTCATAACTGAA
EST: gi|162184067|gb|FC358813.1|FC358813
EST:     CTTTCTCGGAATCTTTCAAGTTCATGAATGATCTTATGCATACTCGCAAG                         GGCCGCAAGGACAAAACTCGTCTGGTATCATTACAGCTGCTCATAACTGAA
genomic: CTTTCTCGGAATCTTTCAAGTTCATGAATGATCTTATGCATACTCGCAAGgtacgataaa ... actttttcagGGCCGCAAGGACAAAACTCGTCTGGTATCATTACAGCTGCTCATAACTGAA
EST: gi|162275219|gb|FC451195.1|FC451195
EST:     CTTTCTCGGAATCTTTCAAGTTCATGAATGATCTTATGCATACTCGCAAG                         GGCCGCAAGGACAAAACTCGTCTGGTATCATTACAGCTGCTCATAACTGAA
genomic: CTTTCTCGGAATCTTTCAAGTTCATGAATGATCTTATGCATACTCGCAAGgtacgataaa ... actttttcagGGCCGCAAGGACAAAACTCGTCTGGTATCATTACAGCTGCTCATAACTGAA
EST: gi|162256529|gb|FC432839.1|FC432839
EST:     CTTTCTCGGAATCTTTCAAGTTCATGAATGATCTTATGCATACTCGCAAG                         GGCCGCAAGGACAAAACTCGTCTGGTATCATTACAGCTGCTCATAACTGAA
genomic: CTTTCTCGGAATCTTTCAAGTTCATGAATGATCTTATGCATACTCGCAAGgtacgataaa ... actttttcagGGCCGCAAGGACAAAACTCGTCTGGTATCATTACAGCTGCTCATAACTGAA
EST: gi|162256528|gb|FC432838.1|FC432838
EST:     CTTTCTCGGAATCTTTCAAGTTCATGAATGATTTTATGCATACTCGCAAG                         GGCCGCAAGGACAAAACTCGTCTGGTATCATTACAGCTGCTCATAACTGAA
genomic: CTTTCTCGGAATCTTTCAAGTTCATGAATGATCTTATGCATACTCGCAAGgtacgataaa ... actttttcagGGCCGCAAGGACAAAACTCGTCTGGTATCATTACAGCTGCTCATAACTGAA