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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgaaccagcccgtctcttcttcacaattttgaagttcaagttgtatgacctagagaggaggtggattgagatgatttaggatgagtttcgaactaggttttataattttatgaatcttttatataaatattcttgtctgtcagGTACTTAAAGAGCGTAGGTTACGACGTGACTTACGTGCGGAATTTTACTGACATTGATGATAAG

Basic information

species Physcomitrella patens
transcript PP1S504_12V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162275220|gb|FC451196.1|FC451196
EST:     AGTCATATTGGCCATGCCCGTGTCTACGTCGCTTTTGATGTTCTCTTCCG                         GTACTTAAAGAGCGTAGGTTACGACGTGACTTACGTGCGGAATTTTACTGA
genomic: AGTCATATTGGCCATGCCCGTGTCTACGTCGCTTTTGATGTTCTCTTCCGgtgagtgaac ... tgtctgtcagGTACTTAAAGAGCGTAGGTTACGACGTGACTTACGTGCGGAATTTTACTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgaactaggttttataattttatgaatcttttatataaatattcttgtctgtcagGTACTTAAAGAGCGTAGGTTACGACGTGACTTACGTGCGGAATTTTACTGACATTGATGATAAG
                                         ttcttgtct  CT-rich tract
         ttttataattttatga  TA-rich tract