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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTAAAGAGCGTAGGTTACGACGTGACTTACGTGCGGAATTTTACTGACATTGATGATAAGgtaactcgtttgagctttatccttgacttcatatttttttggatatgtttgtgtctaaactccacacatgaccagattctgcgctggagtggttcaatcg...

Basic information

species Physcomitrella patens
transcript PP1S504_12V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S504_12V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os09g38420.1 (Oryza sativa), 5'ss of exon 2
GTACTTAAAGAGCGTAGGTTACGACGTGACTTACGTGCGGAATTTTACTGACATTGATGATAAGgtaactcgtttg--agctttatccttgact---tcatatttttttggatatgtttgtgtctaaactccacacatgaccagattctgcgctggagtggttcaatcg
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GTACTTGCGTTATTTGGACCATAAAGTGCGCTATGTTCGGAATTTTACTGACATTGATGACAAGgtgatttatgggtcaaatttattttcaaacaagtgatgctggtcctcattatctgaaagctaaatttaatgta-aacaaggaatcgtattgtatttattta----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162275220|gb|FC451196.1|FC451196
EST:     TAGGTTACGACGTGACTTACGTGCGGAATTTTACTGACATTGATGATAAG                         ATCATTAAGAGGGCGAATGAAGTGGGGGAGGATCCTTTGAATCTAAGTAGA
genomic: TAGGTTACGACGTGACTTACGTGCGGAATTTTACTGACATTGATGATAAGgtaactcgtt ... tcgtatgcagATCATTAAGAGGGCGAATGAAGTGGGGGAGGATCCTTTGAATCTAAGTAGA