1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TTACTCATCAGAAGTTAAGAAGACGGAAGTTCTTATGGAGAATTTCCGCCGTGCAATTGGGCTTCGTATTAAAGAGAACAAAGAGGTTTACGAGGGCGAGgtaaggcaacaagttttccggctctataggatattacgattcatatttaatggtagatttttgtagcaatagccatgaaatcaataaaagattcttgcga...
species | Physcomitrella patens |
transcript | PP1S4_73V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTGCAATTGGGCTTCGTATTAAAGAGAACAAAGAGGTTTACGAGGGCGAG GTGACAGAGCTCTCCCCTGAAGAAACAGAAAGCACTACAGGAGGGTATGGTEST: gi|162237933|gb|FC412534.1|FC412534
genomic: GTGCAATTGGGCTTCGTATTAAAGAGAACAAAGAGGTTTACGAGGGCGAGgtaaggcaac ... acctatgcagGTGACAGAGCTCTCCCCTGAAGAAACAGAAAGCACTACAGGAGGGTATGGT
EST: GTGCAATTGGGCTTCGTATTAAAGAGAACAAAGAGGTTTACGAGGGCGAG GTGACAGAGCTCTCCCCTGAAGAAACAGAAAGCACTACAGGAGGGTATGGTEST: gi|100363873|gb|BY966213.1|BY966213
genomic: GTGCAATTGGGCTTCGTATTAAAGAGAACAAAGAGGTTTACGAGGGCGAGgtaaggcaac ... acctatgcagGTGACAGAGCTCTCCCCTGAAGAAACAGAAAGCACTACAGGAGGGTATGGT
EST: GTGCAATTGGGCTTCGTATTAAAGAGAACAAAGAGGTTTACGAGGGCGAG GTGACAGAGCTCTCCCCTGAAGAAACAGAAAGCACTACAGGGAGG-TATGGEST: gi|162252178|gb|FC425856.1|FC425856
genomic: GTGCAATTGGGCTTCGTATTAAAGAGAACAAAGAGGTTTACGAGGGCGAGgtaaggcaac ... acctatgcagGTGACAGAGCTCTCCCCTGAAGAAACAGAAAGCACTACAGG-AGGGTATGG
EST: GTGCAATTGGGCTTCGTATTAAAGAGAACAAAGAGGTTTACGAGGGCGAG GTGACAGAGCTCTCCCCTGAAGAAACAGAAAGCACTACAGGAGGGTATGGTEST: gi|67717889|gb|BJ968148.1|BJ968148
genomic: GTGCAATTGGGCTTCGTATTAAAGAGAACAAAGAGGTTTACGAGGGCGAGgtaaggcaac ... acctatgcagGTGACAGAGCTCTCCCCTGAAGAAACAGAAAGCACTACAGGAGGGTATGGT
EST: GTGCAATTGGGCTTCGTATTAAAGAGAACAAAGAGGTTTACGAGGGCGAG GTGACAGAGCTTTCCCCTGAAGAAACAGAAAGCACTACAGGAGGGTATGGTEST: gi|67719827|gb|BJ970086.1|BJ970086
genomic: GTGCAATTGGGCTTCGTATTAAAGAGAACAAAGAGGTTTACGAGGGCGAGgtaaggcaac ... acctatgcagGTGACAGAGCTCTCCCCTGAAGAAACAGAAAGCACTACAGGAGGGTATGGT
EST: GTGCAATTGGGCTTCGTATTAAAGAGAACAAAGAGGTTTACGAGGGCGAG GTGACAGAGCTCTCCCCTGAAGAAACAGAAAGCACTACAGGAGGGTATGGT
genomic: GTGCAATTGGGCTTCGTATTAAAGAGAACAAAGAGGTTTACGAGGGCGAGgtaaggcaac ... acctatgcagGTGACAGAGCTCTCCCCTGAAGAAACAGAAAGCACTACAGGAGGGTATGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACTCATCAGAAGTTAAGAAGACGGAAGTTCTTATGGAGAATTTCCGCCGTGCAATTGGGCTTCGTATTAAAGAGAACAAAGAGGTTTACGAGGGCGAGgtaaggcaacaagttttccggctctataggatattacgattcatatttaatggtagatttttgtagcaatagccatgaaatcaataaaagattcttgcga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caataaaa