1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCACGCTGTTCAGCTGTTAACACCAGCAAGTATTGTGGCGAAAACTAATGGCCGCGAGCAGATTAGCAAGgtttgcttctattcctgccgcagagtaaaaatgaatttgttatattgcttggtgttttaccattggctcgctgctaagaatccccgatttctgatagagagctggcatcacacagtctctgatagagagttccgttattttattctgaaccaaacttctttcttgcag
species | Physcomitrella patens |
transcript | PP1S4_73V6.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CACCAGCAAGTATTGTGGCGAAAACTAATGGCCGCGAGCAGATTAGCAAG GGAGATTTGGAGGATATTGCAACGCTTTTCCTGGACGCCAAAGCCTCTGCTEST: gi|162250403|gb|FC426265.1|FC426265
genomic: CACCAGCAAGTATTGTGGCGAAAACTAATGGCCGCGAGCAGATTAGCAAGgtttgcttct ... tttcttgcagGGAGATTTGGAGGATATTGCAACGCTTTTCCTGGACGCCAAAGCCTCTGCT
EST: CACCAGCAAGTATTGTGGCGAAAACTAATGGCCGCGAGCAGATTAGCAAG GGAGATTTGGAGGATATTGCAACGCTTTTCCTGGACGCCAAAGCCTCTGCTEST: gi|67728088|gb|BJ978347.1|BJ978347
genomic: CACCAGCAAGTATTGTGGCGAAAACTAATGGCCGCGAGCAGATTAGCAAGgtttgcttct ... tttcttgcagGGAGATTTGGAGGATATTGCAACGCTTTTCCTGGACGCCAAAGCCTCTGCT
EST: CACCAGCAAGTATTGTGGCGAAAACTAATGGCCGCGAGCAGATTAGCAAG GGAGATTTGGAGGATATTGCAACGCTTTTCCTGGACGCCAAAGCCTCTGCTEST: gi|67726395|gb|BJ976654.1|BJ976654
genomic: CACCAGCAAGTATTGTGGCGAAAACTAATGGCCGCGAGCAGATTAGCAAGgtttgcttct ... tttcttgcagGGAGATTTGGAGGATATTGCAACGCTTTTCCTGGACGCCAAAGCCTCTGCT
EST: CACCAGCAAGTATTGTGGCGAAAACTAATGGCCGCGAGCAGATTAGCAAG GGAGATTTGGAGGATATTGCAACGCTTTTCCTGGACGCCAAAGCCTCTGCTEST: gi|162252177|gb|FC425855.1|FC425855
genomic: CACCAGCAAGTATTGTGGCGAAAACTAATGGCCGCGAGCAGATTAGCAAGgtttgcttct ... tttcttgcagGGAGATTTGGAGGATATTGCAACGCTTTTCCTGGACGCCAAAGCCTCTGCT
EST: CACCAGCAAGTATTGTGGCGAAAACTAATGGCCGCGAGCAGATTAGCAAG GGAGATTTGGAGGATATTGCAACGCTTTTCCTGGACGCCAAAGCCTCTGCTEST: gi|67721546|gb|BJ971805.1|BJ971805
genomic: CACCAGCAAGTATTGTGGCGAAAACTAATGGCCGCGAGCAGATTAGCAAGgtttgcttct ... tttcttgcagGGAGATTTGGAGGATATTGCAACGCTTTTCCTGGACGCCAAAGCCTCTGCT
EST: CACCAGCAAGTATTGTGGCGAAAACTAATGGCCGCGAGCAGATTAGCAAG GGAGATTTGGAGGATATTGCAACGCTTTTCCTGGACGCCAAAGCCTCTGCTEST: gi|162237932|gb|FC412533.1|FC412533
genomic: CACCAGCAAGTATTGTGGCGAAAACTAATGGCCGCGAGCAGATTAGCAAGgtttgcttct ... tttcttgcagGGAGATTTGGAGGATATTGCAACGCTTTTCCTGGACGCCAAAGCCTCTGCT
EST: CACCAGCAAGTATTGTGGCGAAAACTAATGGCCGCGAGCAGATTAGCAAG GGAGATTTGGAGGATATTGCAACGCTTTTCCTGGACGCCAAAGCCTCTGCT
genomic: CACCAGCAAGTATTGTGGCGAAAACTAATGGCCGCGAGCAGATTAGCAAGgtttgcttct ... tttcttgcagGGAGATTTGGAGGATATTGCAACGCTTTTCCTGGACGCCAAAGCCTCTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACGCTGTTCAGCTGTTAACACCAGCAAGTATTGTGGCGAAAACTAATGGCCGCGAGCAGATTAGCAAGgtttgcttctattcctgccgcagagtaaaaatgaatttgttatattgcttggtgttttaccattggctcgctgctaagaatccccgatttctgatagagagctggcatcacacagtctctgatagagagttccgttattttattctgaaccaaacttctttcttgcag
- - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG