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...gaaggagcatgagagcatcgatatgttggcggagggatgtctgactatcgcacggtttgaatgatgtgcattctcttttttttcacatttcgggttccagGAGGATGGCACAGCGATGGATGTGGCCGCTGGATTCGTTGGCCAGGAACAAGCTCGAGAAGCTGCTGGGCTGGTTGTGGACATGATCCGGCAGAAGAAGA
species | Physcomitrella patens |
transcript | PP1S4_73V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAAGCAGAGAGTTGCTTCTCACACGCACATCAAAGGCTTGGGCCTCAAG GAGGATGGCACAGCGATGGATGTGGCCGCTGGATTCGTTGGCCAGGAACAAEST: gi|67703039|gb|BJ963272.1|BJ963272
genomic: AAAAGCAGAGAGTTGCTTCTCACACGCACATCAAAGGCTTGGGCCTCAAGgttagtattt ... cgggttccagGAGGATGGCACAGCGATGGATGTGGCCGCTGGATTCGTTGGCCAGGAACAA
EST: AAAAGCAGAGAGTTGCTTCTCACACGCACATCAAAGGCTTGGGCCTCAAG GAGGATGGCACAGCGATGGATGTGGCCGCTGGATTCGTTGGCCAGGAACAAEST: gi|18355135|gb|BJ187194.1|BJ187194
genomic: AAAAGCAGAGAGTTGCTTCTCACACGCACATCAAAGGCTTGGGCCTCAAGgttagtattt ... cgggttccagGAGGATGGCACAGCGATGGATGTGGCCGCTGGATTCGTTGGCCAGGAACAA
EST: AAAAGCAGAGAGTTGCTTCTCACACGCACATCAAAGGCTTGGGCCTCAAG GAGGATGGCACAGCGATGGATGTGGCCGCTGGATTCGTTGGCCAGGAACAAEST: gi|162237933|gb|FC412534.1|FC412534
genomic: AAAAGCAGAGAGTTGCTTCTCACACGCACATCAAAGGCTTGGGCCTCAAGgttagtattt ... cgggttccagGAGGATGGCACAGCGATGGATGTGGCCGCTGGATTCGTTGGCCAGGAACAA
EST: AAAAGCAGAGAGTTGCTTCTCACACGCACATCAAAGGCTTGGGCCTCAAG GAGGATGGCACAGCGATGGATGTGGCCGCTGGATTCGTTGGCCAGGAACAAEST: gi|18332448|gb|BJ164461.1|BJ164461
genomic: AAAAGCAGAGAGTTGCTTCTCACACGCACATCAAAGGCTTGGGCCTCAAGgttagtattt ... cgggttccagGAGGATGGCACAGCGATGGATGTGGCCGCTGGATTCGTTGGCCAGGAACAA
EST: AAAAGCAGAGAGTTGCTTCTCACACGCACATCAAAGGCTTGGGCCTCAAG GAGGATGGCACAGCGATGGATGTGGCCGCTGGATTCGTTGGCCAGGAACAAEST: gi|100363873|gb|BY966213.1|BY966213
genomic: AAAAGCAGAGAGTTGCTTCTCACACGCACATCAAAGGCTTGGGCCTCAAGgttagtattt ... cgggttccagGAGGATGGCACAGCGATGGATGTGGCCGCTGGATTCGTTGGCCAGGAACAA
EST: AAAAGCAGAGAGTTGCTTCTCACACGCACATCAAAGGCTTGGGCCTCAAG GAGGATGGCACAGCGATGGATGTGGCCGCTGGATTCGTTGGCCAGGAACAAEST: gi|67717889|gb|BJ968148.1|BJ968148
genomic: AAAAGCAGAGAGTTGCTTCTCACACGCACATCAAAGGCTTGGGCCTCAAGgttagtattt ... cgggttccagGAGGATGGCACAGCGATGGATGTGGCCGCTGGATTCGTTGGCCAGGAACAA
EST: AAAAGCAGAGAGTTGCTTCCCACACGCACATCAAAGGCTTGGGCCTCAAG GAGGATGGCACAGCGATGGATGTGGCCGCTGGATTCGTTGGCCAGGAACAAEST: gi|67719827|gb|BJ970086.1|BJ970086
genomic: AAAAGCAGAGAGTTGCTTCTCACACGCACATCAAAGGCTTGGGCCTCAAGgttagtattt ... cgggttccagGAGGATGGCACAGCGATGGATGTGGCCGCTGGATTCGTTGGCCAGGAACAA
EST: AAAAGCAGAGAGTTGCTTCTCACACGCACATCAAAGGCTTGGGCCTCAAG GAGGATGGCACAGCGATGGATGTGGCCGCTGGATTCGTTGGCCAGGAACAA
genomic: AAAAGCAGAGAGTTGCTTCTCACACGCACATCAAAGGCTTGGGCCTCAAGgttagtattt ... cgggttccagGAGGATGGCACAGCGATGGATGTGGCCGCTGGATTCGTTGGCCAGGAACAA
tatcgcacggtttgaatgatgtgcattctcttttttttcacatttcgggttccagGAGGATGGCACAGCGATGGATGTGGCCGCTGGATTCGTTGGCCAGGAACAAGCTCGAGAAGCTGCTGGGCTGGTTGTGGACATGATCCGGCAGAAGAAGA
cattctcttttttttc CT-rich tract
ttttttttcacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaggagcatgagagcatcgatatgttggcggagggatgtctgactatcgcacggtttgaatgatgtgcattctcttttttttcacatttcgggttccagGAGGATGGCACAGCGATGGATGTGGCCGCTGGATTCGTTGGCCAGGAACAAGCTCGAGAAGCTGCTGGGCTGGTTGTGGACATGATCCGGCAGAAGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG