Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAAGGGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtctcgtactacttgctgaaccttttcaacgacaagtctagctcgcatgcacctaaatcgaattagagtaatttctgatatcttgactgaaacgagcccttgttattctcag

Basic information

species Physcomitrella patens
transcript PP1S422_7V6.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15261359|gb|BI436669.1|BI436669
EST:     CCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: CCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162262522|gb|FC439734.1|FC439734
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162198842|gb|FC372869.1|FC372869
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|37840233|gb|BJ598241.1|BJ598241
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|208378241|gb|DC918862.1|DC918862
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|15261762|gb|BI437072.1|BI437072
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|18340941|gb|BJ172972.1|BJ172972
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|18334128|gb|BJ166144.1|BJ166144
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162171847|gb|FC348984.1|FC348984
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|18336444|gb|BJ168466.1|BJ168466
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162254392|gb|FC430527.1|FC430527
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162230556|gb|FC407146.1|FC407146
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|37827445|gb|BJ585457.1|BJ585457
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162263114|gb|FC439780.1|FC439780
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162185363|gb|FC360937.1|FC360937
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|37847528|gb|BJ605536.1|BJ605536
EST:     TTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGNACAGCAGCCGGTATCGTCAAATACNTGAAG
genomic: TTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162254391|gb|FC430526.1|FC430526
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|18335567|gb|BJ167587.1|BJ167587
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|208377612|gb|DC926894.1|DC926894
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|18336651|gb|BJ168674.1|BJ168674
EST:     TCCCAGCAGNAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: TCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|37853537|gb|BJ611545.1|BJ611545
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162218093|gb|FC394956.1|FC394956
EST:     CTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: CTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|37824366|gb|BJ582432.1|BJ582432
EST:     TTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: TTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|37827885|gb|BJ585897.1|BJ585897
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162230555|gb|FC407145.1|FC407145
EST:     TTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: TTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|18339103|gb|BJ171129.1|BJ171129
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162273996|gb|FC450343.1|FC450343
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162166449|gb|FC342431.1|FC342431
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162248896|gb|FC422890.1|FC422890
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162181355|gb|FC357085.1|FC357085
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162248487|gb|FC420934.1|FC420934
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162167528|gb|FC344219.1|FC344219
EST:     TCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: TCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|67720293|gb|BJ970552.1|BJ970552
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|208398676|gb|DC916199.1|DC916199
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|100431989|gb|BY978609.1|BY978609
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGGAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|7047275|gb|AW477169.1|AW477169
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTNGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162248897|gb|FC422891.1|FC422891
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162270571|gb|FC446496.1|FC446496
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162262523|gb|FC439735.1|FC439735
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|37844797|gb|BJ602805.1|BJ602805
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGGGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|67694073|gb|BJ954306.1|BJ954306
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|18332703|gb|BJ164716.1|BJ164716
EST:     GAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|37828074|gb|BJ586086.1|BJ586086
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162263113|gb|FC439779.1|FC439779
EST:     TCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: TCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|15262155|gb|BI437465.1|BI437465
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|15261295|gb|BI436605.1|BI436605
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|100413123|gb|BY992598.1|BY992598
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|37827776|gb|BJ585788.1|BJ585788
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|37840773|gb|BJ598781.1|BJ598781
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|18335249|gb|BJ167267.1|BJ167267
EST:     GGTATCTTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTCGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|208350976|gb|DC925981.1|DC925981
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|37845794|gb|BJ603802.1|BJ603802
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162273997|gb|FC450344.1|FC450344
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|37844487|gb|BJ602495.1|BJ602495
EST:     TTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: TTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
EST: gi|162257577|gb|FC433711.1|FC433711
EST:     GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCT                         ACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG
genomic: GGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 34 (downstream exon)
Score: 81

ATTGAAGGGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtct ... ttattctcagACTCCTCTTGACACGGAAAGGACAGCAGCCGGTATCGTCAAATACCTGAAGGATCATGTCACACACAAATTTGAAGCGCCTGATGTCCCAGAGCCCGAGA




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTGAAGGGTATCCTACCATTCTCTTCTTCCCAGCAGGAGACAAGAGCGTTGAGCCTgtaagtgtctcgtactacttgctgaaccttttcaacgacaagtctagctcgcatgcacctaaatcgaattagagtaatttctgatatcttgactgaaacgagcccttgttattctcag

- - - - - - - - - - - - - - - - -  AGGAGA