1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTCTGATGTGACGAGACAGTTGCTTCTGTTTGCGAATCCTGAGGAATATCAGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAGgtatgatgtgccacgacttctcattaactgtgtatacatattcggtaaccccaattgccgttcttaacatcgctgatgctactggtggctgcag
species | Physcomitrella patens |
transcript | PP1S422_7V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAG ATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTTEST: gi|162218094|gb|FC394957.1|FC394957
genomic: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAGgtatgatgtg ... gtggctgcagATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTT
EST: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAG ATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTTEST: gi|100413810|gb|BY974995.1|BY974995
genomic: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAGgtatgatgtg ... gtggctgcagATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTT
EST: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAG ATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTTEST: gi|162170029|gb|FC345082.1|FC345082
genomic: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAGgtatgatgtg ... gtggctgcagATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTT
EST: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAG ATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTTEST: gi|162254392|gb|FC430527.1|FC430527
genomic: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAGgtatgatgtg ... gtggctgcagATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTT
EST: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAG ATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTTEST: gi|162167529|gb|FC344220.1|FC344220
genomic: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAGgtatgatgtg ... gtggctgcagATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTT
EST: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGGCTTTCAAGAAGAAG ATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTTEST: gi|162248488|gb|FC420935.1|FC420935
genomic: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAGgtatgatgtg ... gtggctgcagATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTT
EST: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAG ATTACCTTTGTTCTCGTGGACCTCGCTGAEST: gi|162230556|gb|FC407146.1|FC407146
genomic: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAGgtatgatgtg ... gtggctgcagATTACCTTTGTTCTCGTGGACCTCGCTGA
EST: TGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAG ATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTTEST: gi|162256673|gb|FC433191.1|FC433191
genomic: TGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAGgtatgatgtg ... gtggctgcagATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTT
EST: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAG ATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTTEST: gi|162249688|gb|FC426516.1|FC426516
genomic: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAGgtatgatgtg ... gtggctgcagATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTT
EST: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAG ATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTTEST: gi|162198843|gb|FC372870.1|FC372870
genomic: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAGgtatgatgtg ... gtggctgcagATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTT
EST: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAG ATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTTEST: gi|162262523|gb|FC439735.1|FC439735
genomic: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAGgtatgatgtg ... gtggctgcagATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTT
EST: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAG ATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTTEST: gi|162185364|gb|FC360938.1|FC360938
genomic: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAGgtatgatgtg ... gtggctgcagATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTT
EST: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAG ATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTTEST: gi|100413123|gb|BY992598.1|BY992598
genomic: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAGgtatgatgtg ... gtggctgcagATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTT
EST: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAG ATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTTEST: gi|162273997|gb|FC450344.1|FC450344
genomic: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAGgtatgatgtg ... gtggctgcagATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTT
EST: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAG ATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTT
genomic: AGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAGgtatgatgtg ... gtggctgcagATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTGATGTGACGAGACAGTTGCTTCTGTTTGCGAATCCTGAGGAATATCAGAAGATCCGTGCTGATTATGAAGAGGCAGCCAAGTCTTTCAAGAAGAAGgtatgatgtgccacgacttctcattaactgtgtatacatattcggtaaccccaattgccgttcttaacatcgctgatgctactggtggctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG