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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACCTTTGTTCTCGTGGACCTCGCTGATGAGGAGGTGGCCACTCCCGTTCTGGACTTCTTCGCACTTGACAGCGAGAAGACAAGGgtactttcctcaagcacctcgacgttgcattatgtatttgctcaagtacttcgatagttcacccttgggttggcttctggtttcgataattcgcatgaca...

Basic information

species Physcomitrella patens
transcript PP1S422_7V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162228933|gb|FC404726.1|FC404726
EST:     TGGCCACTCCCGTTCTGGACTTCTTCGCACTTGACAGCGAGAAGACAAGG                         CTATTGGGATTTGTAGCTGAGGAGACCAGCGGCAAGTACCTGCACGATGGT
genomic: TGGCCACTCCCGTTCTGGACTTCTTCGCACTTGACAGCGAGAAGACAAGGgtactttcct ... tttaatgcagCTATTGGGATTTGTAGCTGAGGAGACCAGCGGCAAGTACCTGCACGATGGT
EST: gi|162218094|gb|FC394957.1|FC394957
EST:     TGGCCACTCCCGTTCTGGACTTCTTCGCACTTGACAGCGAGAAGACAAGG                         CTATTGNGATTTGTAGCTGAGGAGACCAGCGGCAAGTACCTGCACGATGGT
genomic: TGGCCACTCCCGTTCTGGACTTCTTCGCACTTGACAGCGAGAAGACAAGGgtactttcct ... tttaatgcagCTATTGGGATTTGTAGCTGAGGAGACCAGCGGCAAGTACCTGCACGATGGT
EST: gi|162170029|gb|FC345082.1|FC345082
EST:     TGGCCACTCCCGTTCTGGACTTCTTCGCACTTGACAGCGAGAAGACAAGG                         CTATTGGGATTTGTAGCTGAGGAGACCAGCGGCAAGTACCTGCACGATGGT
genomic: TGGCCACTCCCGTTCTGGACTTCTTCGCACTTGACAGCGAGAAGACAAGGgtactttcct ... tttaatgcagCTATTGGGATTTGTAGCTGAGGAGACCAGCGGCAAGTACCTGCACGATGGT
EST: gi|162167529|gb|FC344220.1|FC344220
EST:     TGGCCACTCCCGTTCTGGACTTCTTCGCACTTGACAGCGAGAAGACAAGG                         CTATTGGGATTTGTAGCTG
genomic: TGGCCACTCCCGTTCTGGACTTCTTCGCACTTGACAGCGAGAAGACAAGGgtactttcct ... tttaatgcagCTATTGGGATTTGTAGCTG
EST: gi|162198843|gb|FC372870.1|FC372870
EST:     TGGCCACTCCCGTTCTGGACTTCTTCGCACTTGACAGCGAGAAGACAAGG                         CTATTGGGATTTGTAGCTG
genomic: TGGCCACTCCCGTTCTGGACTTCTTCGCACTTGACAGCGAGAAGACAAGGgtactttcct ... tttaatgcagCTATTGGGATTTGTAGCTG