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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtaaaaatatatcctgaggatctctgagctttgacatatactgcttatgagcgagtttgataacgtgcggtgatacacttgaagatctaagttttttttttctcgaattggtgtatgagcagGTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGCTCCCTCTCGTTATTGTGTTTACTCGTGACACAGCCGAGATTATATTCGA

Basic information

species Physcomitrella patens
transcript PP1S422_7V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162228933|gb|FC404726.1|FC404726
EST:     TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCG                         GTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGC
genomic: TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCGgtacgtaaaa ... gtatgagcagGTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGC
EST: gi|162257578|gb|FC433712.1|FC433712
EST:     TCCTGCTCTCGTCTTGTTGAAGAAACAGAACGAGAAGGTTGCGACTTTCG                         GTGGAGATTTTGA
genomic: TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCGgtacgtaaaa ... gtatgagcagGTGGAGATTTTGA
EST: gi|162166450|gb|FC342432.1|FC342432
EST:     TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCG                         GTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGC
genomic: TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCGgtacgtaaaa ... gtatgagcagGTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGC
EST: gi|162171848|gb|FC348985.1|FC348985
EST:     TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCG                         GTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGC
genomic: TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCGgtacgtaaaa ... gtatgagcagGTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGC
EST: gi|162218094|gb|FC394957.1|FC394957
EST:     TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCG                         GTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGC
genomic: TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCGgtacgtaaaa ... gtatgagcagGTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGC
EST: gi|162170029|gb|FC345082.1|FC345082
EST:     TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCG                         GTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGC
genomic: TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCGgtacgtaaaa ... gtatgagcagGTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGC
EST: gi|162167529|gb|FC344220.1|FC344220
EST:     TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCG                         GTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGC
genomic: TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCGgtacgtaaaa ... gtatgagcagGTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGC
EST: gi|162248488|gb|FC420935.1|FC420935
EST:     TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCG                         GTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGC
genomic: TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCGgtacgtaaaa ... gtatgagcagGTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGC
EST: gi|67702577|gb|BJ962810.1|BJ962810
EST:     TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCG                         GTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGC
genomic: TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCGgtacgtaaaa ... gtatgagcagGTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGC
EST: gi|100419910|gb|BY975902.1|BY975902
EST:     TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCG                         GGGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGC
genomic: TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCGgtacgtaaaa ... gtatgagcagGTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGC
EST: gi|100409294|gb|BY991940.1|BY991940
EST:     TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCG                         GTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAAAACAG
genomic: TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCGgtacgtaaaa ... gtatgagcagGTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACA-AG
EST: gi|162198843|gb|FC372870.1|FC372870
EST:     TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCG                         GTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGC
genomic: TCCTGCTCTCGTCTTGTTGAAGAAGCAGAACGAGAAGGTTGCGACTTTCGgtacgtaaaa ... gtatgagcagGTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggtgatacacttgaagatctaagttttttttttctcgaattggtgtatgagcagGTGGAGATTTTGAAAGAAAGGCTATTGGCGACTTTGTCTCGGAGAACAAGCTCCCTCTCGTTATTGTGTTTACTCGTGACACAGCCGAGATTATATTCGA
                 atctaagttttttttt  TA-rich tract