1 5' 3' | 2 5' 3' | 3 5' 3' |
...accgaacacatttagcttaccaatctcagtgaggatttgtgtaggacagaagcattcacccctgagcagtggttgaaattcctcgattaattgtgtgcagGGTCCCTTCTCAACTTTTGATGACACTCTGTTAACCATCACGGGCGGAGCAGGACTGTTCCGGGAGGCGAGAGGGGTGATTCATCTCCATAATATCACAC
species | Physcomitrella patens |
transcript | PP1S41_314V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGCGACGTACACATTCTACTTGGGAGACATGGGCCATGTGTCCGCGCAG GGTCCCTTCTCAACTTTTGATGACACTCTGTTAACCATCACGGGCGGAGCAEST: gi|67693160|gb|BJ953393.1|BJ953393
genomic: AGGCGACGTACACATTCTACTTGGGAGACATGGGCCATGTGTCCGCGCAGgtacacaccc ... ttgtgtgcagGGTCCCTTCTCAACTTTTGATGACACTCTGTTAACCATCACGGGCGGAGCA
EST: AGGCGACGTACACATTCTACTTGGGAGACATGGGCCATGTGTCCGCGCAG GGTCCCTTCTCAACTTTTGATGACACTCTGTTAACCATCACGGGCGGAGCA
genomic: AGGCGACGTACACATTCTACTTGGGAGACATGGGCCATGTGTCCGCGCAGgtacacaccc ... ttgtgtgcagGGTCCCTTCTCAACTTTTGATGACACTCTGTTAACCATCACGGGCGGAGCA
acagaagcattcacccctgagcagtggttgaaattcctcgattaattgtgtgcagGGTCCCTTCTCAACTTTTGATGACACTCTGTTAACCATCACGGGCGGAGCAGGACTGTTCCGGGAGGCGAGAGGGGTGATTCATCTCCATAATATCACAC
gattaat putative branch site (score: 3)
attaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accgaacacatttagcttaccaatctcagtgaggatttgtgtaggacagaagcattcacccctgagcagtggttgaaattcctcgattaattgtgtgcagGGTCCCTTCTCAACTTTTGATGACACTCTGTTAACCATCACGGGCGGAGCAGGACTGTTCCGGGAGGCGAGAGGGGTGATTCATCTCCATAATATCACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG