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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGAGCAATTTGCTTTGCAGCCCGCAATCTCTACCAGCAGGAAATCTGAGACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAGgtatatctgagttatttaaggcttacgatgtgtgctagtcacttgttttgtggtctttcgcagcagagaacgatataaacacatccaataatttgcggtactaacagtcaatgctttcccaattcttgtag

Basic information

species Physcomitrella patens
transcript PP1S41_314V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100400448|gb|BY954482.1|BY954482
EST:     GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAG                         AGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
genomic: GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAGgtatatctga ... attcttgtagAGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
EST: gi|100432280|gb|BY960405.1|BY960405
EST:     GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCTCCAAGAGAG                         AGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
genomic: GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAGgtatatctga ... attcttgtagAGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
EST: gi|100387159|gb|BY951558.1|BY951558
EST:     GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAG                         AGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
genomic: GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAGgtatatctga ... attcttgtagAGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
EST: gi|100364172|gb|BY966751.1|BY966751
EST:     GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAG                         AGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
genomic: GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAGgtatatctga ... attcttgtagAGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
EST: gi|100385687|gb|BY987752.1|BY987752
EST:     GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAG                         AGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
genomic: GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAGgtatatctga ... attcttgtagAGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
EST: gi|67569889|gb|BJ942713.1|BJ942713
EST:     GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAG                         AGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
genomic: GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAGgtatatctga ... attcttgtagAGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
EST: gi|100364533|gb|BY984651.1|BY984651
EST:     GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAG                         AGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
genomic: GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAGgtatatctga ... attcttgtagAGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
EST: gi|67693160|gb|BJ953393.1|BJ953393
EST:     ATTCATGTGGGACGCACTCCCCNAGAGAG                         AGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
genomic: ATTCATGTGGGACGCACTCCCCAAGAGAGgtatatctga ... attcttgtagAGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGGAGCAATTTGCTTTGCAGCCCGCAATCTCTACCAGCAGGAAATCTGAGACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAGgtatatctgagttatttaaggcttacgatgtgtgctagtcacttgttttgtggtctttcgcagcagagaacgatataaacacatccaataatttgcggtactaacagtcaatgctttcccaattcttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA