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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatctgagttatttaaggcttacgatgtgtgctagtcacttgttttgtggtctttcgcagcagagaacgatataaacacatccaataatttgcggtactaacagtcaatgctttcccaattcttgtagAGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACAGTCCTGCGTTTTTGCCGTTCAGCACCATCAACATTTCTAAGCCACAGGA

Basic information

species Physcomitrella patens
transcript PP1S41_314V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100400448|gb|BY954482.1|BY954482
EST:     GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAG                         AGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
genomic: GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAGgtatatctga ... attcttgtagAGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
EST: gi|100432280|gb|BY960405.1|BY960405
EST:     GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCTCCAAGAGAG                         AGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
genomic: GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAGgtatatctga ... attcttgtagAGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
EST: gi|100387159|gb|BY951558.1|BY951558
EST:     GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAG                         AGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
genomic: GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAGgtatatctga ... attcttgtagAGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
EST: gi|100364172|gb|BY966751.1|BY966751
EST:     GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAG                         AGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
genomic: GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAGgtatatctga ... attcttgtagAGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
EST: gi|100385687|gb|BY987752.1|BY987752
EST:     GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAG                         AGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
genomic: GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAGgtatatctga ... attcttgtagAGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
EST: gi|67569889|gb|BJ942713.1|BJ942713
EST:     GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAG                         AGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
genomic: GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAGgtatatctga ... attcttgtagAGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
EST: gi|100364533|gb|BY984651.1|BY984651
EST:     GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAG                         AGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
genomic: GACCGAGGCAGTGAGGAGGTTATTCATGTGGGACGCACTCCCCAAGAGAGgtatatctga ... attcttgtagAGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
EST: gi|67693160|gb|BJ953393.1|BJ953393
EST:     ATTCATGTGGGACGCACTCCCCNAGAGAG                         AGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA
genomic: ATTCATGTGGGACGCACTCCCCAAGAGAGgtatatctga ... attcttgtagAGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacacatccaataatttgcggtactaacagtcaatgctttcccaattcttgtagAGGAAGTGCAGCTATTCAGTGTGTATGAAATCAACGAGCGCGATCGCAACAGTCCTGCGTTTTTGCCGTTCAGCACCATCAACATTTCTAAGCCACAGGA
                      tactaac  putative branch site (score: 0)
                                     ctttcccaattctt  putative PPT
          aataattt  TA-rich tract