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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgagaaccttgcattagtggtgcaagtacattcttgtgctatcacatggttttcagagagtgttagtggcagcctacagttttatcgtttgggattgcagGTCAGCATCGCGAAGCAATGGAAAGATGTTCTGGATTACAATGACAAGATTGGTTACCTAGTTCATGTAAGTTGCTCTAACAAAGTGTGTTAAGTTGTGT

Basic information

species Physcomitrella patens
transcript PP1S39_197V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208369044|gb|DC931290.1|DC931290
EST:     AGGACAAAATAGCTATCTGGACTAAGACTGCCTCTAATGAGGCTGCTCAG                         GTCAGCATCGCGAAGCANTGGAAAGATGTTCTGGATTACA
genomic: AGGACAAAATAGCTATCTGGACTAAGACTGCCTCTAATGAGGCTGCTCAGgtgagttgtc ... gggattgcagGTCAGCATCGCGAAGCAATGGAAAGATGTTCTGGATTACA
EST: gi|67571986|gb|BJ944810.1|BJ944810
EST:     AGGACAAAATAGCTATCTGGACTAAGACTGCCTCTAATGAGGCTGCTCAG                         GTCAGCATCGCGAA
genomic: AGGACAAAATAGCTATCTGGACTAAGACTGCCTCTAATGAGGCTGCTCAGgtgagttgtc ... gggattgcagGTCAGCATCGCGAA
EST: gi|208374804|gb|DC932059.1|DC932059
EST:     AGGACAAAATAGCTATCTGGACTAAGACTGCCTCTAATGAGGCTGCTCAG                         GTCAGCATCGCGAAGCAATGGAAAGATGTTCTGGATTACAATGACAAGA
genomic: AGGACAAAATAGCTATCTGGACTAAGACTGCCTCTAATGAGGCTGCTCAGgtgagttgtc ... gggattgcagGTCAGCATCGCGAAGCAATGGAAAGATGTTCTGGATTACAATGACAAGA
EST: gi|208370617|gb|DC936133.1|DC936133
EST:     AGGACAAAATAGCTATCTGGACTAAGACTGCCTCTAATGAGGCTGCTCAG                         GTCAGCATCGCGAA
genomic: AGGACAAAATAGCTATCTGGACTAAGACTGCCTCTAATGAGGCTGCTCAGgtgagttgtc ... gggattgcagGTCAGCATCGCGAA
EST: gi|67507600|gb|BJ940481.1|BJ940481
EST:     AGGACAAAATAGCTATCTGGACTAAGACTGCCTCTAATGAGGCTGCTCAG                         GTCAGCATCGCGAAGCAATGGAAAGATGTTCTGGATTACAATGACAAGATT
genomic: AGGACAAAATAGCTATCTGGACTAAGACTGCCTCTAATGAGGCTGCTCAGgtgagttgtc ... gggattgcagGTCAGCATCGCGAAGCAATGGAAAGATGTTCTGGATTACAATGACAAGATT
EST: gi|162225236|gb|FC402002.1|FC402002
EST:     AGGACAAAATAGCTATCTGGACTAAGACTGCCTCTAATGAGGCTGCTCAG                         GTCAGCATCGCGAAGCAATGGAAAGATGTTCTGGATTACAATGACAAGATT
genomic: AGGACAAAATAGCTATCTGGACTAAGACTGCCTCTAATGAGGCTGCTCAGgtgagttgtc ... gggattgcagGTCAGCATCGCGAAGCAATGGAAAGATGTTCTGGATTACAATGACAAGATT
EST: gi|208374770|gb|DC932039.1|DC932039
EST:     AGGACAAAATAGCTATCTGGACTAAGACTGCCTCTAATGAGGCTGCTCAG                         GTCAGCATCGCGAAGCANTGGAAAGATGTTCTGGATTACANTGACAANATT
genomic: AGGACAAAATAGCTATCTGGACTAAGACTGCCTCTAATGAGGCTGCTCAGgtgagttgtc ... gggattgcagGTCAGCATCGCGAAGCAATGGAAAGATGTTCTGGATTACAATGACAAGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggttttcagagagtgttagtggcagcctacagttttatcgtttgggattgcagGTCAGCATCGCGAAGCAATGGAAAGATGTTCTGGATTACAATGACAAGATTGGTTACCTAGTTCATGTAAGTTGCTCTAACAAAGTGTGTTAAGTTGTGT
                                agttttat  TA-rich tract