1 5' 3' | 2 5' 3' | 3 5' 3' |
...agcgtgttttaggatggtattgattctacaaacttttgatgtaggttagttgatttgttccggaagtactgacattgtactgcttgtcattcgtttgcagCTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTTTCACTGCTTCAAGAGCGGAATTGAGCCTAAATGGGAGGACCCTAAGTGT
species | Physcomitrella patens |
transcript | PP1S39_197V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTG CTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTTEST: gi|67571986|gb|BJ944810.1|BJ944810
genomic: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTGgtatggatag ... tcgtttgcagCTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTT
EST: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTG CTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTTEST: gi|208374804|gb|DC932059.1|DC932059
genomic: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTGgtatggatag ... tcgtttgcagCTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTT
EST: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTG CTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTTEST: gi|67712745|gb|BJ966194.1|BJ966194
genomic: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTGgtatggatag ... tcgtttgcagCTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTT
EST: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTG CTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTTEST: gi|208370617|gb|DC936133.1|DC936133
genomic: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTGgtatggatag ... tcgtttgcagCTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTT
EST: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTG CTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTTEST: gi|67507600|gb|BJ940481.1|BJ940481
genomic: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTGgtatggatag ... tcgtttgcagCTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTT
EST: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTG CTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTTEST: gi|19788032|gb|BQ040702.1|BQ040702
genomic: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTGgtatggatag ... tcgtttgcagCTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTT
EST: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTG CTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTTEST: gi|67575480|gb|BJ948304.1|BJ948304
genomic: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTGgtatggatag ... tcgtttgcagCTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTT
EST: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTG CTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTTEST: gi|100394449|gb|BY972074.1|BY972074
genomic: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTGgtatggatag ... tcgtttgcagCTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTT
EST: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTG CTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTTEST: gi|67704161|gb|BJ964394.1|BJ964394
genomic: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTGgtatggatag ... tcgtttgcagCTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTT
EST: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTG CTTGTACAACAACATTTTGCAACCTANCAAGCTGATTGCTGGEST: gi|67569897|gb|BJ942721.1|BJ942721
genomic: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTGgtatggatag ... tcgtttgcagCTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGG
EST: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTG CTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTTEST: gi|67575463|gb|BJ948287.1|BJ948287
genomic: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTGgtatggatag ... tcgtttgcagCTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTT
EST: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTG CTTGTACAACAACATTTEST: gi|162225236|gb|FC402002.1|FC402002
genomic: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTGgtatggatag ... tcgtttgcagCTTGTACAACAACATTT
EST: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTG CTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTTEST: gi|18354376|gb|BJ186432.1|BJ186432
genomic: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTGgtatggatag ... tcgtttgcagCTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTT
EST: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTG CTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTTEST: gi|67576793|gb|BJ949617.1|BJ949617
genomic: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTGgtatggatag ... tcgtttgcagCTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTT
EST: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTG CTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTTEST: gi|208374770|gb|DC932039.1|DC932039
genomic: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTGgtatggatag ... tcgtttgcagCTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTT
EST: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTG CTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTT
genomic: AGCTCTCTGCGTTCCGTCTACACGTTTCACACTGTTGAGGAATTTTGGTGgtatggatag ... tcgtttgcagCTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTT
ttagttgatttgttccggaagtactgacattgtactgcttgtcattcgtttgcagCTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTTTCACTGCTTCAAGAGCGGAATTGAGCCTAAATGGGAGGACCCTAAGTGT
tactgac putative branch site (score: 16)
ttcgttt putative PPT
atttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcgtgttttaggatggtattgattctacaaacttttgatgtaggttagttgatttgttccggaagtactgacattgtactgcttgtcattcgtttgcagCTTGTACAACAACATTTTGCAACCTAGCAAGCTGATTGCTGGGGCAGATTTTCACTGCTTCAAGAGCGGAATTGAGCCTAAATGGGAGGACCCTAAGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA