1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttcagtgtgttgaatatcgtcgggattgatgggatggatgttcgagtcgaagattgctttcctgaccttgcagagtgtcgtaggtaccttgatatgaatctgatattttttccctgcttgatatctgcattgcag
species | Physcomitrella patens |
transcript | PP1S399_19V6.5 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG CTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTGEST: gi|208392400|gb|DC904246.1|DC904246
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
EST: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG CTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTGEST: gi|67573928|gb|BJ946752.1|BJ946752
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
EST: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG CTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTGEST: gi|18368205|gb|BJ200290.1|BJ200290
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
EST: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG CTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTGEST: gi|100392595|gb|BY971788.1|BY971788
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
EST: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG CTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTGEST: gi|100448742|gb|CJ973041.1|CJ973041
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
EST: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG CTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTGEST: gi|18348183|gb|BJ180230.1|BJ180230
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
EST: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG CTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTGEST: gi|208353920|gb|DC930088.1|DC930088
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
EST: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG CTTGNCGTANACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTGEST: gi|100369024|gb|BY984986.1|BY984986
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
EST: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG CTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttcagtgtgttgaatatcgtcgggattgatgggatggatgttcgagtcgaagattgctttcctgaccttgcagagtgtcgtaggtaccttgatatgaatctgatattttttccctgcttgatatctgcattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG