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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGGGTGGAGAGATTGGACACGATGTGTATTTCTCAATGGCCCGTGGAAACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgaccaacttcactaatcattcgtcaaccgtttgtcttctaggagactggaatcctcaaattttttgagcgcgggtcttagttgtaacttgtgcatcgtttttgcgcgcag

Basic information

species Physcomitrella patens
transcript PP1S399_19V6.5
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S399_19V6.3 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os12g42876.1 (Oryza sativa), 5'ss of exon 1
GGACGGGTGGAGAGATTGGACACGATGTGTATTTCTCAATGGCCCGTGGAAACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgaccaacttcactaatcattcgtcaaccgtttgtcttctaggagactggaatcctcaaattttttgagcgcgggtcttagttgtaacttgtgcatcgtttttgcgcgcag
|||| ||||||||||||||   |      || ||||| |||||  | || ||    ||    || ||||||||||||||||||||||| || ||||||||||||||      ||||  |  | |   |||   |  |    || ||      |   |   ||||   |||||    | | |  | |||||  ||| | ||                
GGACTGGTGGAGAGATTGGGTTCAGCACCTACTTCTCGATGGCTAGGGGCAATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctttgcttccatt-taagctgtctgacagtaacattttatttagatttcacattcaa-cattttgctaactgctgct-gttgtgcctt-tacag---------------

upper sequence: PP1S399_19V6.3 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os12g42884.1 (Oryza sativa), 5'ss of exon 2
GGACGGGTGGAGAGATTGGACACGATGTGTATTTCTCAATGGCCCGTGGAAACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgaccaacttcactaatcattcgtcaaccgtttgtcttctaggagactggaatcctcaaattttttgagcgcgggtcttagttgtaacttgtgcatcgtttttgcgcgcag
|||| ||||||||||||||   |      || ||||| |||||  | |||||    ||    || || |||||||||||||||||||| || ||||||||||||||      ||||  |      |     || ||     || ||    | |   ||  ||||  |||| |    | |||  |  ||   || | | ||                
GGACCGGTGGAGAGATTGGGTTCAGCACCTACTTCTCGATGGCTAGGGGAAATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtactttgcttccatttaagatgtctgacagtaaacattttatttaatttttatattcaacattttagctaactggtgctgttt---acctttacag---------------

upper sequence: PP1S399_19V6.3 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G112149_T03 (Zea mays), 5'ss of exon 2
GGACGGGTGGAGAGATTGGACACGATGTGTATTTCTCAATGGCCCGTGGAAACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgaccaacttcactaatcattcgtcaaccgtttgtcttctaggagactggaatcctcaaattttttgagcgcgggtcttagttgtaacttgtgcatcgtttttgcgcgcag
|||| || || ||||||||          || ||||| |||||| | |||||    ||    || ||||||||||||||||||||||| ||||| ||||||||||| | |  ||    | |    |        ||   | || | |  |  | |      || ||||| | | |     |||| |  |                           
GGACTGGAGGCGAGATTGGCTTGAGCACCTACTTCTCTATGGCCAGGGGAAATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGATACAAACTAgtaagtaaactcctgtcttgaatgcttactgctggtggctttttttgtggtattggtctaacatattttattaccttac-tctttgcag---------------------------

upper sequence: PP1S399_19V6.3 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G165747_T02 (Zea mays), 5'ss of exon 2
GGACGGGTGGAGAGATTGGACACGATGTGTATTTCTCAATGGCCCGTGGAAACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgaccaacttcactaatcattcgtcaaccgtttgtcttctaggagactggaatcctcaaattttttgagcgcgggtcttagttgtaacttgtgcatcgtttttgcgcgcag
|||| || || ||||||||          ||||||||||||||| | |||||    ||    || || |||||||||||||||||||| ||||| |||||||||||   |||||||  |     ||          |||  || |  | |       ||    | |||||| |   |    ||   | | |                         
GGACTGGAGGCGAGATTGGCTTGAGCACCTATTTCTCAATGGCCAGGGGAAATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGATACAAACTAgtaagt---caacttc--tgtctcttgaatgtttacttggtttttttgtggtattggtctaacattttttttattaccttgctcc-tcgcag------------------------

upper sequence: PP1S399_19V6.3 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G149751_T02 (Zea mays), 5'ss of exon 2
GGACGGGTGGAGAGATTGGACACGATGTGTATTTCTCAATGGCCCGTGGAAACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgaccaacttcactaatcattcgtcaaccgtttgtcttctaggagactggaatcctcaaattttttgagcgcgggtcttagttgtaacttgtgcatcgtttttgcgcgcag
|||| || ||||||||||||   ||    || ||||| |||||| | || |||   ||    || || |||||||||||||||||||| || |||||||||| |||      |||  |     |     |||  ||   | |  |  |||  |       | | ||||||||    |     || ||| || ||| | ||                
GGACTGGAGGAGAGATTGGATTTGACACCTACTTCTCCATGGCCAGGGGCAACGCCACTGTTCCTGCTATGGAGATGACCAAGTGGTTTGACACCAACTAgtgagtc-----ctttgcctgctac----caatggtaattttagtttgagcttttgtatttaatattttttgctgacaaacttt-gttcta-cttttacag---------------

upper sequence: PP1S399_19V6.3 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA19G29180.2 (Glycine max), 5'ss of exon 2
GGACGGGTGGAGAGATTGGACACGATGTGTATTTCTCAATGGCCCGTGGAAACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgaccaacttcactaatcattcgtcaaccgtttgtcttctaggagactggaatcctcaaattttttgagcgcgggtcttagttgtaacttgtgcatcgtttttgcgcgcag
|||| || || |||||||||  |||    || ||||| |||||| | || ||    ||   ||| || ||||||||||||||||||||||| ||||||||||||||||  |      ||||||  |  |   | || ||   |   | |   |    |  |  | || | |      |     | | || ||||  ||  |   |  ||  | |||
GGACCGGCGGCGAGATTGGATTCGACACCTACTTCTCCATGGCCAGAGGTAATGCTACCGTGCCTGCTATGGAGATGACCAAGTGGTTCGACACCAACTAgtaagtgatgatgcctcctaatccctaat--gctgtatgatattcggaatgttcttttatt--agttgtgtcgtaatgatctattgctg-aactgttgtgtttgtgctgatc-cag

upper sequence: PP1S399_19V6.3 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA16G04240.1 (Glycine max), 5'ss of exon 2
GGACGGGTGGAGAGATTGGACACGATGTGTATTTCTCAATGGCCCGTGGAAACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgaccaacttcactaatcat-tcgtcaaccgtttgtcttctaggagactggaatcctcaaattttttgagcgcgggtcttagttgtaacttgtgcatcgtttttgcgcgcag
|||| || || ||||||||    |||   || ||||| |||||| | || ||    ||   ||| || ||||||||||||||||||||||| ||||||||||||||||  |      |||||  | || || |    | || |  |       || |||  ||  |||  |  |  |    | ||   |  | |  |                    
GGACCGGCGGCGAGATTGGGTTTGATACCTACTTCTCCATGGCCAGAGGTAATGCTACCGTGCCAGCTATGGAGATGACCAAGTGGTTCGACACCAACTAgtaagtgatgatgcctcctaatgctgtcttctattaatggtgtgttgttgtggtgtaatgatctgattcctgaattgttatttttgtgttgatccag--------------------

upper sequence: PP1S399_19V6.3 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA17G23730.1 (Glycine max), 5'ss of exon 1
GGACGGGTGGAGAGATTGGACACGATGTGTATTTCTCAATGGCCCGTGGAAACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgaccaacttcactaatcattcgtcaaccgtttgtcttctaggagactggaatcctcaaattttttgagcgcgggtcttagttgtaacttgtgcatcgtttttgcgcgcag
|||  || | |||||| |||   |||   | |||||| |||||| | || ||     |   ||| ||||||||||||||||||||||| || ||||||||||||||| | |||||   |  |  |   |  |   ||  || | | |         ||  | | ||  ||| |       || |   |    |||  | |  ||  ||        
GGAACGGCGAAGAGATAGGATTTGATACCTTTTTCTCCATGGCCAGAGGTAATGCATCTGTGCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtggc-aacttagattctgctgtattgattattactcctttcgt---tcctgattataagatcattttaat-taattcatgcct----cttaagaaaagtagtta-------

upper sequence: PP1S399_19V6.3 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA17G24400.1 (Glycine max), 5'ss of exon 1
GGACGGGTGGAGAGATTGGACACGATGTGTATTTCTCAATGGCCCGTGGAAACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgaccaacttcactaatcattcgtcaaccgtttgtcttctaggagactggaatcctcaaattttttgagcgcgggtcttagttgtaacttgtgcatcgtttttgcgcgcag
|||   | | ||| || ||    |||   | |||||| |||||| | || ||     |   |||  |||||||||||||||||||||| || ||||||||||||||| | |||||   |  |  |   |  |   ||  || | | |    |   |||  | | ||  ||| |       |  |   |||  |||  | |  ||  ||        
GGAACAGCGAAGAAATAGGGTTTGATACCTTTTTCTCCATGGCCAGAGGTAATGCATCTGTGCCTACCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtggc-aacttaggttctgttgtattgattattactccttttgt---ccctaattataagatcattttaat-----taattcatgtctcttaagaaaagtagtta-------

upper sequence: PP1S399_19V6.3 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA05G10840.1 (Glycine max), 5'ss of exon 1
GGACGGGTGGAGAGATTGGACACGATGTGTATTTCTCAATGGCCCGTGGAAACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgaccaacttcactaatcattcgtcaaccgtttgtcttctaggagactggaatcctcaaattttttgagcgcgggtcttagttgtaacttgtgcatcgtttttgcgcgcag
 ||    ||| ||||| | |  ||||   || ||||| |||||| | || ||     |   ||| |||||||||||||| |||||||| || ||||||||||||||| | | ||   |   |  ||  |  |  | ||||  | |  ||  |     |  | ||  |||   |   | |  || |  ||||   ||||||| | |   |       
TGAACAATGGGGAGATAGAATTCGATACCTACTTCTCCATGGCCAGAGGTAATGCCTCTGTGCCTGCCATGGAGATGACGAAGTGGTTTGACACCAACTAgtaagtggc-agct---caggtttttgttgtattgattgtact-tgtgatgccatggtggtaaagatttc--attactgacctgatgtgta---tgtgcattgatccag-------

upper sequence: PP1S399_19V6.3 (Physcomitrella patens), 5'ss of exon 2
lower sequence: AT5G20980.2 (Arabidopsis thaliana), 5'ss of exon 2
GGACGGGTGGAGAGATTGGACACGATGTGTATTTCTCAATGGCCCGTGGAAACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgaccaa--cttcactaatcattcgtcaaccgtttgtcttctaggagactggaatcctcaaattttttgagcgcgggtcttagttgtaacttgtgcatcgtttttgcgcgcag
||    |||| ||||||||    ||||| || ||||| ||||| || |||||     |    |  || ||||| |||||||||||||| ||||||||||||||||| ||  |  ||||  |  ||  || |       ||   ||||  |  | |         ||||  | | |  |                                        
GGGAAAGTGGTGAGATTGGGTTTGATGTTTACTTCTCCATGGCACGGGGAAATGCTTCTGCTCATGCTATGGAAATGACCAAGTGGTTTGATACCAACTAgtaagtaactgaatcttctttcttccctctttgttaagtttctttctcagttattattgctaataaatgctctaacag----------------------------------------

upper sequence: PP1S399_19V6.3 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv06s0009g01080.t01 (Vitis vinifera), 5'ss of exon 2
GGACGGGTGGAGAGATTGGACACGATGTGTATTTCTCAATGGCCCGTGGAAACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgaccaacttcactaatcattcgtcaaccgtttgtcttctaggagactggaatcctcaaattttttgagcgcgggtcttagttgtaacttgtgcat-cgtttttgcgcgcag
|||  ||||| || |||||    ||||  || || || |||||  | || ||     |     | |||||||| ||||||||||||||||| |||||||||| |||||   || || ||      || |   | |  ||  ||  | ||    | ||||||    ||||    | |  |   | ||   | |||| || ||  | ||||     |||
GGAATGGTGGGGAAATTGGGTTTGATGCCTACTTTTCCATGGCTAGGGGCAATGCCTCTGTAACAGCCATGGAAATGACCAAGTGGTTCGACACCAACTAgtgagtgat-gacctctctctcttctcatgtcctgagtgatttagatgatttagtaatcct----ttttactggtgtag--ttaagccatgacttatgaatgtgatttttgatacag

upper sequence: PP1S399_19V6.3 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv08s0056g01570.t01 (Vitis vinifera), 5'ss of exon 2
GGACGGGTGGAGAGATTGGACACGATGTGTATTTCTCAATGGCCCGTGGAAACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgaccaacttcactaatcattcgtcaaccgtttgtcttctaggagactggaatcctcaaattttttgagcgcgggtcttagttgtaacttgtgcatcgtttttgcgcgcag
|||  ||||| ||||||| |  |||||| || ||||| |||||| | |||||     |    ||||| ||||| ||||||||||||||||| || ||||||||||||   | | || |   || |        | ||| |    |   | | ||  ||    | |   |   |  | ||||  |   || | |  |                    
GGAATGGTGGCGAGATTGAATTCGATGTCTACTTCTCCATGGCCAGAGGAAATGCCTCCGTTCCCGCTATGGAAATGACCAAGTGGTTCGACACAAACTAgtaagtggtgatcctctcctctcct--------catttctggcttgaaatagtgatattgatagacactg-aattgtgggtgatctgtggatccag--------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18344976|gb|BJ177017.1|BJ177017
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: gi|18347252|gb|BJ179298.1|BJ179298
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: gi|18359592|gb|BJ191653.1|BJ191653
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: gi|18372727|gb|BJ204329.1|BJ204329
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: gi|18373563|gb|BJ205141.1|BJ205141
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: gi|18369599|gb|BJ201687.1|BJ201687
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGT
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGT
EST: gi|208392400|gb|DC904246.1|DC904246
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: gi|67573928|gb|BJ946752.1|BJ946752
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: gi|18328417|gb|BJ160422.1|BJ160422
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAA
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAA
EST: gi|18368205|gb|BJ200290.1|BJ200290
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: gi|18346742|gb|BJ178787.1|BJ178787
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTT
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGA-GTTGAGCGGTGAGACAAAGTTTGTTTACTCTT
EST: gi|18361776|gb|BJ193843.1|BJ193843
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: gi|18366415|gb|BJ198494.1|BJ198494
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: gi|18326345|gb|BJ158344.1|BJ158344
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGA
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGA
EST: gi|18373623|gb|BJ205201.1|BJ205201
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: gi|18331192|gb|BJ163201.1|BJ163201
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGA
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGA
EST: gi|100392595|gb|BY971788.1|BY971788
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: gi|18359493|gb|BJ191554.1|BJ191554
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: gi|100448742|gb|CJ973041.1|CJ973041
EST:     AACAAGACGAANCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: gi|18348183|gb|BJ180230.1|BJ180230
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: gi|18372722|gb|BJ204324.1|BJ204324
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: gi|208353920|gb|DC930088.1|DC930088
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: gi|18370435|gb|BJ202037.1|BJ202037
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: gi|100369024|gb|BY984986.1|BY984986
EST:     AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA                         CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGACGGGTGGAGAGATTGGACACGATGTGTATTTCTCAATGGCCCGTGGAAACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgaccaacttcactaatcattcgtcaaccgtttgtcttctaggagactggaatcctcaaattttttgagcgcgggtcttagttgtaacttgtgcatcgtttttgcgcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG