1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtggtttagtgtacgtaactgaatgatgcgttggtgcatctcgttcggtatcgaaccgaggtatatcttcgttggctaatgtgttgcacctctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCTCTTGAGTCGATGTGGGATGGCAAGACCC
species | Physcomitrella patens |
transcript | PP1S399_19V6.5 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|18347252|gb|BJ179298.1|BJ179298
genomic: AGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|18359592|gb|BJ191653.1|BJ191653
genomic: TCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|18372727|gb|BJ204329.1|BJ204329
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|67704006|gb|BJ964239.1|BJ964239
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|18373563|gb|BJ205141.1|BJ205141
genomic: TTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|18369599|gb|BJ201687.1|BJ201687
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|208392400|gb|DC904246.1|DC904246
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|18367651|gb|BJ199734.1|BJ199734
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|67573928|gb|BJ946752.1|BJ946752
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|18328417|gb|BJ160422.1|BJ160422
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|18346742|gb|BJ178787.1|BJ178787
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|18361776|gb|BJ193843.1|BJ193843
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|18366415|gb|BJ198494.1|BJ198494
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|18326345|gb|BJ158344.1|BJ158344
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|18373623|gb|BJ205201.1|BJ205201
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|100392595|gb|BY971788.1|BY971788
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|18359493|gb|BJ191554.1|BJ191554
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|18353384|gb|BJ185439.1|BJ185439
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|18351680|gb|BJ183732.1|BJ183732
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAN ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|18348183|gb|BJ180230.1|BJ180230
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|18372722|gb|BJ204324.1|BJ204324
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|208353920|gb|DC930088.1|DC930088
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|18370435|gb|BJ202037.1|BJ202037
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCEST: gi|18350058|gb|BJ182109.1|BJ182109
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
cggtatcgaaccgaggtatatcttcgttggctaatgtgttgcacctctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCTCTTGAGTCGATGTGGGATGGCAAGACCC
ggctaat putative branch site (score: 7)
cacctctctc putative PPT
tatatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggtttagtgtacgtaactgaatgatgcgttggtgcatctcgttcggtatcgaaccgaggtatatcttcgttggctaatgtgttgcacctctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCTCTTGAGTCGATGTGGGATGGCAAGACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA