1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTCGGGACAGAAAGACGAGGCTTTCTTCGCGGCTAACGCTTCCGCTCAGGAATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataatgatgtgtgatcgccgatagcgcatcgtggtgctgtactcgaatagggagtatgaatgcctgctgcagtataaagcttaaatgcagtgcatgtaattgcacagaatgcatgcttacttagttagatacagaactgactttcaaaggatgctggattttcag
species | Physcomitrella patens |
transcript | PP1S399_19V6.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGCEST: gi|162275290|gb|FC451266.1|FC451266
genomic: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
EST: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGCEST: gi|162156429|gb|FC332661.1|FC332661
genomic: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
EST: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGCEST: gi|162181010|gb|FC358664.1|FC358664
genomic: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
EST: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGCEST: gi|162164320|gb|FC340991.1|FC340991
genomic: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
EST: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGCEST: gi|162171094|gb|FC347708.1|FC347708
genomic: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
EST: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGCEST: gi|162277617|gb|FC453248.1|FC453248
genomic: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
EST: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGCEST: gi|162189799|gb|FC365541.1|FC365541
genomic: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
EST: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGCEST: gi|162160395|gb|FC337396.1|FC337396
genomic: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
EST: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGCEST: gi|162169968|gb|FC345908.1|FC345908
genomic: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
EST: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGCEST: gi|100399159|gb|BY954229.1|BY954229
genomic: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
EST: AACAAGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGCEST: gi|19790140|gb|BQ041713.1|BQ041713
genomic: AACAAGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
EST: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGCEST: gi|162150213|gb|FC326298.1|FC326298
genomic: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
EST: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGCEST: gi|18326134|gb|BJ158133.1|BJ158133
genomic: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
EST: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGCEST: gi|162179653|gb|FC355711.1|FC355711
genomic: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
EST: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGCEST: gi|162185338|gb|FC360912.1|FC360912
genomic: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
EST: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGCEST: gi|162153731|gb|FC329134.1|FC329134
genomic: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
EST: GGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGCEST: gi|162165513|gb|FC340624.1|FC340624
genomic: GGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
EST: AGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGCEST: gi|162230917|gb|FC407172.1|FC407172
genomic: AGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
EST: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGCEST: gi|162152719|gb|FC329725.1|FC329725
genomic: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
EST: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGCEST: gi|162171048|gb|FC346947.1|FC346947
genomic: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
EST: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGCEST: gi|162242611|gb|FC419240.1|FC419240
genomic: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
EST: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCA GCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
genomic: AATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataa ... ggattttcagGCCGCTGCTTTGGCCGGTTCGGAGCACCGTCGATCTACCCCGGTATCAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGGGACAGAAAGACGAGGCTTTCTTCGCGGCTAACGCTTCCGCTCAGGAATCGAGGAGGAACTCCCCCCGCGTTCATAACAAGGCAGTGAAGGAAGCAgtaagtataatgatgtgtgatcgccgatagcgcatcgtggtgctgtactcgaatagggagtatgaatgcctgctgcagtataaagcttaaatgcagtgcatgtaattgcacagaatgcatgcttacttagttagatacagaactgactttcaaaggatgctggattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA