Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgttttcagtgtgttgaatatcgtcgggattgatgggatggatgttcgagtcgaagattgctttcctgaccttgcagagtgtcgtaggtaccttgatatgaatctgatattttttccctgcttgatatctgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTGTTGTCCAAGGGTGACAAGAGCGCGCCCAAGGGTTTCAATACTCTTTCAC

Basic information

species Physcomitrella patens
transcript PP1S399_19V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18344976|gb|BJ177017.1|BJ177017
EST:     TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG                         CTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
EST: gi|18368205|gb|BJ200290.1|BJ200290
EST:     TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG                         CTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
EST: gi|100448742|gb|CJ973041.1|CJ973041
EST:     TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG                         CTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
EST: gi|100369024|gb|BY984986.1|BY984986
EST:     TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG                         CTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggtaccttgatatgaatctgatattttttccctgcttgatatctgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTGTTGTCCAAGGGTGACAAGAGCGCGCCCAAGGGTTTCAATACTCTTTCAC
                aatctgatatttttt  TA-rich tract