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...tgggtggcgtattattgagattagtataggaacgtgggtggtgtaggatgaattttgttgctggttcagagctgtgctcactgttgacgtttgtattcagGGACAGTGAATCGCCAGAGCGTGGCGTTTCACCACCTCGTCGCCAAACGTCCCCTGAAGCAAGGAGCGACTCCCCTCGGCAGCGCAGTCTTTCTCCGGAG
species | Physcomitrella patens |
transcript | PP1S397_41V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGCCCGTAAAAGAGGCGACAGCTAGAAATGGAAATGCATCACCTGCACG GGACAGTGAATCGCCAGAGCGTGGCGTTTCACCACCTCGTCGCCAAACGTCEST: gi|37824987|gb|BJ583053.1|BJ583053
genomic: GAGCCCGTAAAAGAGGCGACAGCTAGAAATGGAAATGCATCACCTGCACGgtgagatttg ... ttgtattcagGGACAGTGAATCGCCAGAGCGTGGCGTTTCACCACCTCGTCGCCAAACGTC
EST: GAGCCCGTAAAAGAGGCGACAGCTAGAAATGGAAATGCATCACCTGCACG GGACAGTGAATCGCCAGAGCGTGGCGTTTCACCACCTNGTCGCCAAACGTCEST: gi|162182671|gb|FC360341.1|FC360341
genomic: GAGCCCGTAAAAGAGGCGACAGCTAGAAATGGAAATGCATCACCTGCACGgtgagatttg ... ttgtattcagGGACAGTGAATCGCCAGAGCGTGGCGTTTCACCACCTCGTCGCCAAACGTC
EST: GAGCCCGTAAAAGAGGCGACAGCTAGAAATGGAAATGCATCACCTGCACG GGACAGTGAATCGCCAGAGCGTGGCGTTTCACCACCTCGTCGCCAAACGTCEST: gi|162182670|gb|FC360340.1|FC360340
genomic: GAGCCCGTAAAAGAGGCGACAGCTAGAAATGGAAATGCATCACCTGCACGgtgagatttg ... ttgtattcagGGACAGTGAATCGCCAGAGCGTGGCGTTTCACCACCTCGTCGCCAAACGTC
EST: GAGCCCGTAAAAGAGGCGACAGCTAGAAATGGAAATGCATCACCTGCACG GGACAGTGAATCGCCAGAGCGTGGCGTTTCACCACCTCGTCGCCAAACGTCEST: gi|208398427|gb|DC916482.1|DC916482
genomic: GAGCCCGTAAAAGAGGCGACAGCTAGAAATGGAAATGCATCACCTGCACGgtgagatttg ... ttgtattcagGGACAGTGAATCGCCAGAGCGTGGCGTTTCACCACCTCGTCGCCAAACGTC
EST: GAGCCCGTAAAAGAGGCGACAGCTAGAAATGGAAATGCATCACCTGCACG GGACAGTGAATCGCCAGAGCGTGGCGTTTCACCACCTCGTCGCCAAACGTC
genomic: GAGCCCGTAAAAGAGGCGACAGCTAGAAATGGAAATGCATCACCTGCACGgtgagatttg ... ttgtattcagGGACAGTGAATCGCCAGAGCGTGGCGTTTCACCACCTCGTCGCCAAACGTC
ggatgaattttgttgctggttcagagctgtgctcactgttgacgtttgtattcagGGACAGTGAATCGCCAGAGCGTGGCGTTTCACCACCTCGTCGCCAAACGTCCCCTGAAGCAAGGAGCGACTCCCCTCGGCAGCGCAGTCTTTCTCCGGAG
aattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggtggcgtattattgagattagtataggaacgtgggtggtgtaggatgaattttgttgctggttcagagctgtgctcactgttgacgtttgtattcagGGACAGTGAATCGCCAGAGCGTGGCGTTTCACCACCTCGTCGCCAAACGTCCCCTGAAGCAAGGAGCGACTCCCCTCGGCAGCGCAGTCTTTCTCCGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG