1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggccagtattgcggtgcattcttctgagtaggagcaattgttggcgagattgaaagatttggatttcgcactaacgtgatcgatgcagctgggatcgcagGTCCAGTAGGGACGATGATCGGTACACAAGGCATTACCGGAGCCGCAGTCGGAGTCGTAGCCGGAGCCGTGATCGCTACGAGCGGTCAAGACATCACGAT
species | Physcomitrella patens |
transcript | PP1S397_41V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGCATGAAGAGAGTTAGCAGATCTGCAAGCCGAAGCCCTAAGCGTCCGAG GTCCAGTAGGGACGATGATCGGTACACAAGGCATTACCGGAGCCGCAGTCGEST: gi|67702413|gb|BJ962646.1|BJ962646
genomic: GGCATGAAGAGAGTTAGCAGATCTGCAAGCCGAAGCCCTAAGCGTCCGAGgtaagttcag ... gggatcgcagGTCCAGTAGGGACGATGATCGGTACACAAGGCATTACCGGAGCCGCAGTCG
EST: GGCATGAAGAGAGTTAGCAGATCTGCAAGCCGAAGCCCTAAGCGTCCGAG GTCCAGTAGGGACGATGATCGGTACACAAGGCATTACCGGAGCCGCAGTCGEST: gi|100400484|gb|BY954500.1|BY954500
genomic: GGCATGAAGAGAGTTAGCAGATCTGCAAGCCGAAGCCCTAAGCGTCCGAGgtaagttcag ... gggatcgcagGTCCAGTAGGGACGATGATCGGTACACAAGGCATTACCGGAGCCGCAGTCG
EST: GGCATGAAGAGAGTTAGCAGATCTGCAAGCCGAAGCCCTAAGCGTCCGAG GTCCAGTAGGGACGATGATCGGTACACAAGGCATTACCGGAGCCGCAGTCG
genomic: GGCATGAAGAGAGTTAGCAGATCTGCAAGCCGAAGCCCTAAGCGTCCGAGgtaagttcag ... gggatcgcagGTCCAGTAGGGACGATGATCGGTACACAAGGCATTACCGGAGCCGCAGTCG
gagattgaaagatttggatttcgcactaacgtgatcgatgcagctgggatcgcagGTCCAGTAGGGACGATGATCGGTACACAAGGCATTACCGGAGCCGCAGTCGGAGTCGTAGCCGGAGCCGTGATCGCTACGAGCGGTCAAGACATCACGAT
cactaac putative branch site (score: 3)
aaagattt TA-rich tract