1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agcgtggtgattcgatcttaggaatatctcctttttgagtatgtcgcagctagtgcatttctttcgttctgttgctgagtggtggtttgtcgttgttcagGTACGAGCGCGGACGACCTTTACCCTTTGTTCGACCGGTATGGAAAGGTGGTAGACATCTTCATTCCCAGAGATCGCAG
species | Physcomitrella patens |
transcript | PP1S397_41V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCGGACATCAGAGACACCTACTCGCTGCTTGTGCTCAACATTACTTTCC GTACGAGCGCGGACGACCTTTACCCTTTGTTCGACCGGTATGGAAAGGTGGEST: gi|67704799|gb|BJ965032.1|BJ965032
genomic: TCCGGACATCAGAGACACCTACTCGCTGCTTGTGCTCAACATTACTTTCCgtacgtgatt ... cgttgttcagGTACGAGCGCGGACGACCTTTACCCTTTGTTCGACCGGTATGGAAAGGTGG
EST: TCCGGACATCAGAGACACCTACTCGCTGCTTGTGCTCAACATTACTTTCC GTACGAGCGCGGACGACCTTTACCCTTTGTTCGACCGGTATGGAAAGGTGGEST: gi|100400484|gb|BY954500.1|BY954500
genomic: TCCGGACATCAGAGACACCTACTCGCTGCTTGTGCTCAACATTACTTTCCgtacgtgatt ... cgttgttcagGTACGAGCGCGGACGACCTTTACCCTTTGTTCGACCGGTATGGAAAGGTGG
EST: TCCGGACATCAGAGACACCTACTCGCTGCTTGTGCTCAACATTACTTTCC GTACGAGCGCGGACGACCTTTACCCTTTGTTCGACCGGTATGGAAAGGTGGEST: gi|67716788|gb|BJ967047.1|BJ967047
genomic: TCCGGACATCAGAGACACCTACTCGCTGCTTGTGCTCAACATTACTTTCCgtacgtgatt ... cgttgttcagGTACGAGCGCGGACGACCTTTACCCTTTGTTCGACCGGTATGGAAAGGTGG
EST: TCCGGACATCAGAGACACCTACTCGCTGCTTGTGCTCAACATTACTTTCC GTACGAGCGCGGACGACCTTTACCCTTTGTTCGACCGGTATGGAAAGGTGG
genomic: TCCGGACATCAGAGACACCTACTCGCTGCTTGTGCTCAACATTACTTTCCgtacgtgatt ... cgttgttcagGTACGAGCGCGGACGACCTTTACCCTTTGTTCGACCGGTATGGAAAGGTGG
gcagctagtgcatttctttcgttctgttgctgagtggtggtttgtcgttgttcagGTACGAGCGCGGACGACCTTTACCCTTTGTTCGACCGGTATGGAAAGGTGGTAGACATCTTCATTCCCAGAGATCGCAG
atttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcgtggtgattcgatcttaggaatatctcctttttgagtatgtcgcagctagtgcatttctttcgttctgttgctgagtggtggtttgtcgttgttcagGTACGAGCGCGGACGACCTTTACCCTTTGTTCGACCGGTATGGAAAGGTGGTAGACATCTTCATTCCCAGAGATCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC