Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGCACACTAGTGCGTCGCTTACAATCAATGAGAATTACGATGGCGATGTCCGCGATGATGTTGAAACTTGGCTGAATTTGACGGTACCAGAGgtaagtcgcattcgtttagtgcagcctctggatatgttttagtgaattgcattattgtgtttgagatactattctcgcttttaatttatgttttcaacattcttgtttgagttaagcatcgtctattctggttatgaatcgcaaacatgctgttcgctatgaataacgccccataattcgtactttactgtag

Basic information

species Physcomitrella patens
transcript PP1S397_39V6.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37835032|gb|BJ593044.1|BJ593044
EST:     GCGATGTCCGCGATGATGTTGAAACTTGGCTGAATTTGACGGTACCAGAG                         GGAAGAAAAGCTCCTTGGAAACACACGATGGAAG
genomic: GCGATGTCCGCGATGATGTTGAAACTTGGCTGAATTTGACGGTACCAGAGgtaagtcgca ... tttactgtagGGAAGAAAAGCTCCTTGGAAACACACGATGGAAG
EST: gi|7583218|gb|AW699382.1|AW699382
EST:     GTTGAAACTTGGCTGAATTTGACGGTACCAGAG                         GGAAGAAAAGCTCCTTGGAAACACACGATGGAAG
genomic: GTTGAAACTTGGCTGAATTTGACGGTACCAGAGgtaagtcgca ... tttactgtagGGAAGAAAAGCTCCTTGGAAACACACGATGGAAG
EST: gi|15327404|gb|BI488043.1|BI488043
EST:     TTGAAACTTGGCTGAATTTGACGGTACCAGAG                         GGAAGAAAAGCTCCTTGGAAACACACGATGGAAG
genomic: TTGAAACTTGGCTGAATTTGACGGTACCAGAGgtaagtcgca ... tttactgtagGGAAGAAAAGCTCCTTGGAAACACACGATGGAAG
EST: gi|162267552|gb|FC444303.1|FC444303
EST:     GCGATGTCCGCGATGATGTTGAAACTTGGCTGAATTTGACGGTACCAGAG                         GGAAGAAAAGCTCCTTGGAAACACACGATGGAAG
genomic: GCGATGTCCGCGATGATGTTGAAACTTGGCTGAATTTGACGGTACCAGAGgtaagtcgca ... tttactgtagGGAAGAAAAGCTCCTTGGAAACACACGATGGAAG
EST: gi|162267551|gb|FC444302.1|FC444302
EST:     GCGATGTCCGCGATGATGTTGAAACTTGGCTGAATTTGACGGTACCAGAG                         GGAAGAAAAGCTCCTTGGAAACACACGATGGAAG
genomic: GCGATGTCCGCGATGATGTTGAAACTTGGCTGAATTTGACGGTACCAGAGgtaagtcgca ... tttactgtagGGAAGAAAAGCTCCTTGGAAACACACGATGGAAG
EST: gi|18336855|gb|BJ168878.1|BJ168878
EST:     GCGATGTCCGCGATGATGTTGAAACTTGGCTGAATTTGACGGTACCAGAG                         GGAAGAAAAGCTCCTTGGAAACACACGATGGAAG
genomic: GCGATGTCCGCGATGATGTTGAAACTTGGCTGAATTTGACGGTACCAGAGgtaagtcgca ... tttactgtagGGAAGAAAAGCTCCTTGGAAACACACGATGGAAG