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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTGAAGGAGATCGAGTCTGACTTGGCTCGTTTCAAATGCGGCATTGCTCATCTCTTTTgtgagtaacaaccaacccgatgacattatttagagaaacatctttggtttgctctaatgactgatatacggagtgtttaaacgcgtgtacaaatacttat...

Basic information

species Physcomitrella patens
transcript PP1S397_39V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37835032|gb|BJ593044.1|BJ593044
EST:     GATCGAGTCTGACTTGGCTCGTTTCAAATGCGGCATTGCTCATCTCTTTT                         TGCAGCACACTAGTGCGTCGCTTACAATCAATGAGAATTACGATGGCGATG
genomic: GATCGAGTCTGACTTGGCTCGTTTCAAATGCGGCATTGCTCATCTCTTTTgtgagtaaca ... ctctgatcagTGCAGCACACTAGTGCGTCGCTTACAATCAATGAGAATTACGATGGCGATG
EST: gi|162267552|gb|FC444303.1|FC444303
EST:     GATCGAGTCTGACTTGGCTCGTTTCAAATGCGGCATTGCTCATCTCTTTT                         TGCAGCACACTAGTGCGTCGCTTACAATCAATGAGAATTACGATGGCGATG
genomic: GATCGAGTCTGACTTGGCTCGTTTCAAATGCGGCATTGCTCATCTCTTTTgtgagtaaca ... ctctgatcagTGCAGCACACTAGTGCGTCGCTTACAATCAATGAGAATTACGATGGCGATG
EST: gi|162267551|gb|FC444302.1|FC444302
EST:     GATCGAGTCTGACTTGGCTCGTTTCAAATGCGGCATTGCTCATCTCTTTT                         TGCAGCACACTAGTGCGTCGCTTACAATCAATGAGAATTACGATGGCGATG
genomic: GATCGAGTCTGACTTGGCTCGTTTCAAATGCGGCATTGCTCATCTCTTTTgtgagtaaca ... ctctgatcagTGCAGCACACTAGTGCGTCGCTTACAATCAATGAGAATTACGATGGCGATG
EST: gi|18336855|gb|BJ168878.1|BJ168878
EST:     GATCGAGTCTGACTTGGCTCGTTTCAAATGCGGCATTGCTCATCTCTTTT                         TGCAGCACACTAAGTGCGTCGCTTACAATCAATGAGAATTACGATGGCGAT
genomic: GATCGAGTCTGACTTGGCTCGTTTCAAATGCGGCATTGCTCATCTCTTTTgtgagtaaca ... ctctgatcagTGCAGCACACT-AGTGCGTCGCTTACAATCAATGAGAATTACGATGGCGAT