1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AATGCGTGATCCAGTTTTGCGTTTCCGACGTTGGTTGGAAGGAGAAGGATGGTGGGACACGGATGCAGAGCAGAAGCTTCGATCCGATGCACGCAATGAGgtttgccattcgttaattcatctagttgtttgcagataccgattacagagttgaatttgctgctggttcgaccaggtagcatgctagttctcttttatac...
species | Physcomitrella patens |
transcript | PP1S207_68V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGTGGGACACGGATGCAGAGCAGAAGCTTCGATCCGATGCACGCAATGAG GTCATCTCGGCCTTGCAGAGTGCGGGCAGTCAAATGAAACAACCCCTAACAEST: gi|208365042|gb|DC947306.1|DC947306
genomic: GGTGGGACACGGATGCAGAGCAGAAGCTTCGATCCGATGCACGCAATGAGgtttgccatt ... ggtggttcagGTCATCTCGGCCTTGCAGAGTGCGGGCAGTCAAATGAAACAACCCCTAACA
EST: GGTGGGACACGGATGCAGAGCAGAAGCTTCGATCCGATGCACGCAATGAG GTCATCTCGGCCTTGCAGAGTGCGGGCAGTCAAATGAAACAACCCCTAACAEST: gi|162255612|gb|FC431610.1|FC431610
genomic: GGTGGGACACGGATGCAGAGCAGAAGCTTCGATCCGATGCACGCAATGAGgtttgccatt ... ggtggttcagGTCATCTCGGCCTTGCAGAGTGCGGGCAGTCAAATGAAACAACCCCTAACA
EST: GGTGGGACACGGATGCAGAGCAGAAGCTTCGATCCGATGCACGCAATGAG GTCATCTCGGCCTTGCAGAGTGCGGGCAGTCAAATGAAACAACCCCTAACAEST: gi|18335077|gb|BJ167095.1|BJ167095
genomic: GGTGGGACACGGATGCAGAGCAGAAGCTTCGATCCGATGCACGCAATGAGgtttgccatt ... ggtggttcagGTCATCTCGGCCTTGCAGAGTGCGGGCAGTCAAATGAAACAACCCCTAACA
EST: GCAGAGCAGAAGCTTCGATCCGATGCACGCAATGAG GTCATCTCGGCCTTGCAGAGTGCGGGCAGTCAAATGAAACAACCCCTAACAEST: gi|162152381|gb|FC328568.1|FC328568
genomic: GCAGAGCAGAAGCTTCGATCCGATGCACGCAATGAGgtttgccatt ... ggtggttcagGTCATCTCGGCCTTGCAGAGTGCGGGCAGTCAAATGAAACAACCCCTAACA
EST: GGTGGGACACGGATGCAGAGCAGAAGCTTCGATCCGATGCACGCAATGAG GTCATCTCGGCCTTGCAGAGTGCGGGCAGTCAAATGAAACAACCCCTAACAEST: gi|162156823|gb|FC333635.1|FC333635
genomic: GGTGGGACACGGATGCAGAGCAGAAGCTTCGATCCGATGCACGCAATGAGgtttgccatt ... ggtggttcagGTCATCTCGGCCTTGCAGAGTGCGGGCAGTCAAATGAAACAACCCCTAACA
EST: GGTGGGACACGGATGCAGAGCAGAAGCTTCGATCCGATGCACGCAATGAG GTCATCTCGGCCTTGCAGAGTGCGGGCAGTCAAATGAAACAACCCCTAACA
genomic: GGTGGGACACGGATGCAGAGCAGAAGCTTCGATCCGATGCACGCAATGAGgtttgccatt ... ggtggttcagGTCATCTCGGCCTTGCAGAGTGCGGGCAGTCAAATGAAACAACCCCTAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGCGTGATCCAGTTTTGCGTTTCCGACGTTGGTTGGAAGGAGAAGGATGGTGGGACACGGATGCAGAGCAGAAGCTTCGATCCGATGCACGCAATGAGgtttgccattcgttaattcatctagttgtttgcagataccgattacagagttgaatttgctgctggttcgaccaggtagcatgctagttctcttttatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC